HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.9 nTPM
HPA:7.9 nTPM
GTEx:9.0 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:18.2 nTPM
Allen mouse:2.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.9
Sample id Sample description nTPM
Hippocampus
nTPM: 7.5
2529 Female, age 94, left hemisphere 8.5
1911 Female, age 85, right hemisphere 8.1
2148 Female, age 91, left hemisphere 8.1
2621 Female, age 67, right hemisphere 7.7
1855 Male, age 76, left hemisphere 7.3
1898 Male, age 80, left hemisphere 5.1
Dentate gyrus
nTPM: 7.1
2530 Female, age 94, left hemisphere 8.0
2531 Female, age 67, both hemispheres 7.9
2528 Male, age 74, both hemispheres 7.2
2246 Female, age 85, both hemispheres 7.1
1927 Female, age 91, both hemispheres 6.3
2010 Male, age 76, both hemispheres 6.3
Entorhinal gyrus
nTPM: 7.9
2613 Female, age 94, left hemisphere 9.4
2686 Male, age 75, right hemisphere 9.3
2117 Female, age 91, right hemisphere 7.9
2764 Male, age 80, right hemisphere 7.3
1787 Male, age 76, left hemisphere 7.1
1938 Female, age 85, left hemisphere 6.1
Hippocampus, CA1
nTPM: 7.1
2082 Female, age 91, right hemisphere 9.5
2045 Male, age 76, both hemispheres 7.5
2527 Male, age 74, both hemispheres 7.0
1873 Female, age 85, both hemispheres 6.7
2749 Male, age 80, left hemisphere 4.8
Hippocampus, CA2
nTPM: 7.4
2113 Female, age 91, right hemisphere 8.9
1940 Female, age 85, left hemisphere 8.1
2437 Female, age 94, left hemisphere 7.5
2249 Male, age 74, both hemispheres 7.1
1963 Male, age 80, left hemisphere 6.8
1892 Male, age 76, both hemispheres 6.2
Hippocampus, CA3
nTPM: 6.8
2861 Female, age 67, both hemispheres 8.6
2620 Female, age 94, left hemisphere 7.5
1891 Female, age 85, both hemispheres 7.3
2436 Male, age 74, both hemispheres 6.2
2137 Male, age 80, left hemisphere 5.6
1867 Male, age 76, both hemispheres 5.4
Parahippocampal cortex
nTPM: 6.9
2622 Female, age 67, right hemisphere 8.9
2018 Male, age 76, both hemispheres 7.7
2692 Male, age 74, both hemispheres 7.4
1990 Female, age 91, right hemisphere 7.0
2245 Female, age 91, both hemispheres 6.8
2250 Female, age 67, right hemisphere 6.4
2693 Female, age 94, both hemispheres 6.4
1933 Female, age 85, both hemispheres 6.3
2532 Female, age 72, left hemisphere 6.3
1850 Male, age 80, both hemispheres 6.0
Perirhinal gyrus
nTPM: 6.4
2848 Male, age 76, right hemisphere 7.6
2521 Female, age 94, right hemisphere 7.2
1847 Female, age 91, left hemisphere 6.3
1794 Male, age 80, right hemisphere 5.4
1841 Female, age 85, right hemisphere 5.3
Subiculum
nTPM: 6.7
2729 Female, age 91, right hemisphere 8.1
2042 Male, age 76, both hemispheres 7.2
1901 Male, age 80, both hemispheres 6.4
2619 Male, age 74, both hemispheres 6.4
2438 Female, age 94, left hemisphere 6.0
1977 Female, age 85, both hemispheres 5.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.0
Samples: 197

Max nTPM: 14.9
Min nTPM: 3.9
Std nTPM: 2.2
Median nTPM: 8.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 14.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 14.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 14.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 14.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 14.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 13.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 12.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 12.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 12.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 12.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 12.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.1
FF:10153-102I9 76 years, female 22.9
FF:10169-103B7 60 years, female 9.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.4
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.0
Sample A Female 4.6
Sample B Female 4.0
Sample C Male 4.9
Sample D Male 4.1
Entorhinal cortex
nTPM: 4.2
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.9
Sample A Female 4.0
Sample B Female 3.9
Sample C Male 4.2
Sample D Male 4.5
Subiculum
nTPM: 4.5
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.2
Sample A Female 4.4
Sample B Female 4.8
Sample C Male 4.6
Sample D Male 4.2
Ventral hippocampus
nTPM: 4.6
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.7
Sample A Female 3.9
Sample B Female 3.7
Sample C Male 5.7
Sample D Male 4.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.2
Samples: 4

Max nTPM: 19.9
Min nTPM: 16.2
Sample A Male 19.9
Sample B Male 16.2
Sample C Female 18.7
Sample D Female 17.9
Hippocampal formation
nTPM: 15.1
Samples: 4

Max nTPM: 16.1
Min nTPM: 13.7
Sample A Male 15.6
Sample B Male 14.8
Sample C Female 13.7
Sample D Female 16.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.9
71497000 Antisense, RP_050913_04_H07, Mouse strain C57BL/6J (56 days, male) 2.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.