MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA:17.3 nTPM
GTEx:13.2 nTPM
FANTOM5:46.7 Scaled Tags Per Million
Pig:2.7 nTPM
Mouse:10.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
2219 Male, age 76, both hemispheres 18.4
2586 Male, age 75, left hemisphere 18.1
1827 Male, age 72, unknown 16.8
2828 Female, age 72, unknown 16.6
2666 Male, age 74, left hemisphere 16.0
1833 Male, age 53, unknown 15.3
2019 Male, age 18, unknown 15.2
1830 Male, age 51, unknown 15.1
2411 Female, age 72, unknown 14.7
1870 Female, age 42, unknown 14.6
Dorsal raphe nucleus
nTPM: 14.8
2298 Female, age 72, unknown 15.1
2047 Male, age 72, unknown 15.0
2750 Male, age 76, both hemispheres 15.0
1828 Male, age 53, unknown 14.6
2016 Female, age 72, unknown 14.1
Inferior colliculus
nTPM: 16.2
2849 Male, age 72, unknown 17.1
2097 Female, age 72, unknown 16.2
1890 Male, age 53, unknown 15.9
1848 Female, age 42, unknown 15.8
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Pedunculopontine tegmental nucleus
nTPM: 16.2
2338 Male, age 61, both hemispheres 16.5
2334 Male, age 80, both hemispheres 16.2
1921 Female, age 85, both hemispheres 16.1
Periaquaductal grey, anterior
nTPM: 15.5
1795 Male, age 51, unknown 16.4
1947 Male, age 18, unknown 15.6
2502 Female, age 75, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 16.2
1831 Male, age 72, unknown 17.2
2850 Male, age 76, both hemispheres 16.7
2464 Female, age 72, unknown 15.9
1840 Male, age 53, unknown 14.8
Periaquaductal grey, lateral
nTPM: 16.7
2140 Male, age 76, both hemispheres 17.9
2053 Male, age 18, unknown 16.1
2272 Male, age 74, both hemispheres 16.1
Pretectal area
nTPM: 17.3
1816 Male, age 51, unknown 19.2
2667 Female, age 75, unknown 17.9
1817 Female, age 42, unknown 17.6
2316 Male, age 76, right hemisphere 17.5
2407 Male, age 75, both hemispheres 17.5
2007 Male, age 72, unknown 17.4
2825 Male, age 18, unknown 17.2
1944 Female, age 72, unknown 16.8
1815 Male, age 53, unknown 16.7
2224 Female, age 72, unknown 16.5
2273 Male, age 74, both hemispheres 16.3
Red nucleus
nTPM: 15.7
2584 Male, age 75, left hemisphere 17.4
2588 Male, age 74, left hemisphere 17.4
2725 Female, age 75, unknown 17.0
2823 Male, age 76, right hemisphere 16.5
2785 Male, age 18, unknown 16.3
2227 Male, age 72, unknown 15.4
2769 Male, age 72, unknown 15.2
2503 Female, age 72, unknown 15.0
1904 Male, age 53, unknown 14.6
1954 Female, age 42, unknown 14.6
1865 Male, age 51, unknown 14.3
1821 Female, age 72, unknown 14.2
Substantia nigra
nTPM: 15.3
1941 Male, age 53, unknown 18.0
2583 Male, age 75, right hemisphere 16.8
2590 Female, age 75, unknown 15.6
1889 Female, age 72, unknown 15.5
1916 Female, age 42, unknown 15.2
2665 Male, age 74, both hemispheres 14.8
1851 Male, age 51, unknown 14.7
2699 Male, age 18, unknown 14.5
2409 Female, age 72, unknown 14.0
2241 Male, age 72, unknown 13.5
Superior colliculus
nTPM: 16.3
2261 Male, age 18, unknown 17.7
2087 Female, age 72, unknown 17.6
1796 Male, age 53, unknown 16.9
2664 Male, age 75, both hemispheres 16.7
1839 Male, age 51, unknown 16.3
1895 Male, age 76, right hemisphere 16.2
1995 Male, age 72, unknown 15.7
2587 Male, age 74, left hemisphere 15.6
2668 Female, age 75, unknown 15.0
1913 Female, age 42, unknown 14.8
Ventral tegmental area
nTPM: 15.3
2021 Male, age 53, unknown 16.1
1942 Male, age 51, unknown 15.6
2218 Male, age 76, both hemispheres 15.6
2223 Female, age 72, unknown 15.3
1915 Female, age 42, unknown 15.0
2410 Female, age 72, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.2
Samples: 139

Max nTPM: 42.9
Min nTPM: 4.5
Std nTPM: 4.3
Median nTPM: 12.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 28.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 25.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 25.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 21.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 20.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 19.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 18.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 18.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 18.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.7
FF:10158-103A5 76 years, female 46.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.7
Pig sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 2.4
Sample C Male 3.2
Sample D Male 3.2
Periaqueductal gray
nTPM: 2.3
Samples: 3

Max nTPM: 2.4
Min nTPM: 2.2
Sample B Female 2.4
Sample C Male 2.4
Sample D Male 2.2
Substantia nigra
nTPM: 2.5
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.1
Sample A Female 2.8
Sample B Female 2.1
Sample C Male 2.8
Sample D Male 2.1
Superior colliculi
nTPM: 2.8
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.5
Sample A Female 2.6
Sample B Female 2.5
Sample C Male 3.0
Sample D Male 2.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 11.6
Min nTPM: 10.4
Sample A Male 11.6
Sample B Male 10.4
Sample C Female 11.2
Sample D Female 10.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68845251 Antisense, RP_050224_01_D08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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