MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.8 nTPM
HPA:54.8 nTPM
GTEx:49.2 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:81.0 nTPM
Mouse:69.9 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.2
2219 Male, age 76, both hemispheres 56.5
2019 Male, age 18, unknown 51.1
2666 Male, age 74, left hemisphere 50.3
1870 Female, age 42, unknown 49.1
2411 Female, age 72, unknown 48.1
1830 Male, age 51, unknown 47.0
1833 Male, age 53, unknown 46.6
2586 Male, age 75, left hemisphere 43.2
2828 Female, age 72, unknown 42.4
1827 Male, age 72, unknown 37.8
Dorsal raphe nucleus
nTPM: 33.2
2750 Male, age 76, both hemispheres 54.5
1828 Male, age 53, unknown 34.0
2047 Male, age 72, unknown 29.1
2298 Female, age 72, unknown 26.6
2016 Female, age 72, unknown 21.7
Inferior colliculus
nTPM: 38.3
1848 Female, age 42, unknown 42.1
2849 Male, age 72, unknown 40.1
2097 Female, age 72, unknown 36.3
1890 Male, age 53, unknown 34.7
Median raphe nucleus
nTPM: 39.2
2220 Male, age 76, midline 39.2
Pedunculopontine tegmental nucleus
nTPM: 44.3
1921 Female, age 85, both hemispheres 51.8
2334 Male, age 80, both hemispheres 46.0
2338 Male, age 61, both hemispheres 35.2
Periaquaductal grey, anterior
nTPM: 30.0
1947 Male, age 18, unknown 32.6
1795 Male, age 51, unknown 30.2
2502 Female, age 75, unknown 27.2
Periaquaductal grey, dorsal
nTPM: 24.4
2464 Female, age 72, unknown 31.7
1831 Male, age 72, unknown 31.3
1840 Male, age 53, unknown 21.3
2850 Male, age 76, both hemispheres 13.2
Periaquaductal grey, lateral
nTPM: 20.8
2053 Male, age 18, unknown 24.5
2272 Male, age 74, both hemispheres 23.5
2140 Male, age 76, both hemispheres 14.5
Pretectal area
nTPM: 38.3
1817 Female, age 42, unknown 49.2
2007 Male, age 72, unknown 48.4
1815 Male, age 53, unknown 45.8
1816 Male, age 51, unknown 44.0
2407 Male, age 75, both hemispheres 44.0
1944 Female, age 72, unknown 40.4
2316 Male, age 76, right hemisphere 39.3
2667 Female, age 75, unknown 36.6
2825 Male, age 18, unknown 31.2
2224 Female, age 72, unknown 26.8
2273 Male, age 74, both hemispheres 15.8
Red nucleus
nTPM: 54.8
1904 Male, age 53, unknown 66.0
2785 Male, age 18, unknown 62.5
1865 Male, age 51, unknown 57.6
2823 Male, age 76, right hemisphere 56.5
1821 Female, age 72, unknown 56.3
2584 Male, age 75, left hemisphere 55.9
2227 Male, age 72, unknown 55.6
2769 Male, age 72, unknown 55.6
2503 Female, age 72, unknown 51.8
2588 Male, age 74, left hemisphere 50.1
1954 Female, age 42, unknown 48.7
2725 Female, age 75, unknown 40.4
Substantia nigra
nTPM: 39.2
1889 Female, age 72, unknown 51.6
2583 Male, age 75, right hemisphere 48.3
1916 Female, age 42, unknown 43.9
1851 Male, age 51, unknown 42.8
2409 Female, age 72, unknown 37.5
2665 Male, age 74, both hemispheres 37.0
1941 Male, age 53, unknown 36.7
2590 Female, age 75, unknown 33.5
2699 Male, age 18, unknown 31.6
2241 Male, age 72, unknown 29.1
Superior colliculus
nTPM: 44.4
2668 Female, age 75, unknown 72.7
1913 Female, age 42, unknown 51.1
1895 Male, age 76, right hemisphere 50.5
1796 Male, age 53, unknown 45.4
2087 Female, age 72, unknown 42.6
1995 Male, age 72, unknown 42.4
2261 Male, age 18, unknown 39.6
1839 Male, age 51, unknown 36.3
2587 Male, age 74, left hemisphere 34.9
2664 Male, age 75, both hemispheres 28.9
Ventral tegmental area
nTPM: 42.8
2223 Female, age 72, unknown 56.2
2410 Female, age 72, unknown 50.2
2218 Male, age 76, both hemispheres 43.2
1915 Female, age 42, unknown 39.3
1942 Male, age 51, unknown 36.1
2021 Male, age 53, unknown 31.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.2
Samples: 139

Max nTPM: 119.3
Min nTPM: 16.1
Std nTPM: 16.0
Median nTPM: 48.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 119.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 113.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 92.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 88.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 82.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 81.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 77.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 75.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 74.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 69.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 68.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.0
Pig sample Sample description nTPM
Midbrain
nTPM: 81.0
Samples: 4

Max nTPM: 113.0
Min nTPM: 56.0
Sample A Female 113.0
Sample B Female 56.0
Sample C Male 85.0
Sample D Male 69.9
Periaqueductal gray
nTPM: 46.6
Samples: 3

Max nTPM: 48.3
Min nTPM: 44.5
Sample B Female 48.3
Sample C Male 46.9
Sample D Male 44.5
Substantia nigra
nTPM: 62.0
Samples: 4

Max nTPM: 78.4
Min nTPM: 37.6
Sample A Female 66.1
Sample B Female 37.6
Sample C Male 65.9
Sample D Male 78.4
Superior colliculi
nTPM: 66.0
Samples: 4

Max nTPM: 86.1
Min nTPM: 31.2
Sample A Female 69.4
Sample B Female 31.2
Sample C Male 77.2
Sample D Male 86.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.9
Samples: 4

Max nTPM: 73.7
Min nTPM: 65.8
Sample A Male 66.3
Sample B Male 65.8
Sample C Female 73.6
Sample D Female 73.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
74359628 Antisense, RP_060207_01_B08, Mouse strain C57BL/6J (56 days, male) 8.1
74635590 Antisense, RP_060215_04_A09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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