BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:13.7 nTPM
HPA:13.7 nTPM
GTEx:27.9 nTPM
FANTOM5:49.3 Scaled Tags Per Million
Pig:4.5 nTPM

CAUDATE - Antibody stainingi
Antibody HPA057684
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.6
1857 Female, age 85, left hemisphere 10.1
1781 Male, age 74, unknown 8.0
1854 Male, age 80, left hemisphere 7.8
2290 Female, age 72, unknown 7.0
2846 Female, age 79, unknown 6.3
2288 Male, age 75, left hemisphere 5.2
2289 Male, age 61, right hemisphere 4.3
2481 Female, age 94, left hemisphere 4.1
Claustrum
nTPM: 8.3
2198 Male, age 80, both hemispheres 9.9
2392 Female, age 94, both hemispheres 9.9
2491 Male, age 75, both hemispheres 9.2
2196 Female, age 79, unknown 8.9
2284 Female, age 91, both hemispheres 8.5
2568 Male, age 61, both hemispheres 8.2
1956 Male, age 74, unknown 7.6
2645 Female, age 72, unknown 6.9
2292 Female, age 85, both hemispheres 5.7
Globus pallidus, externus
nTPM: 2.5
2395 Male, age 75, both hemispheres 3.4
2772 Female, age 79, unknown 2.6
2646 Male, age 61, right hemisphere 2.4
2567 Female, age 72, unknown 2.3
1996 Male, age 80, right hemisphere 1.9
Globus pallidus, internus
nTPM: 2.6
2483 Female, age 94, right hemisphere 3.8
2287 Male, age 75, right hemisphere 3.5
2566 Female, age 72, unknown 2.8
1818 Male, age 74, unknown 2.5
2778 Female, age 91, both hemispheres 2.3
2037 Male, age 80, right hemisphere 2.0
2111 Female, age 85, right hemisphere 1.5
Nucleus accumbens
nTPM: 10.0
1856 Female, age 91, right hemisphere 17.8
1783 Male, age 74, unknown 12.3
2824 Male, age 61, right hemisphere 11.4
1806 Female, age 85, left hemisphere 11.1
2698 Female, age 72, unknown 10.6
2732 Male, age 80, right hemisphere 7.5
2286 Male, age 75, left hemisphere 5.9
2391 Female, age 94, left hemisphere 3.5
Nucleus basalis of Meynert
nTPM: 4.3
2393 Male, age 80, right hemisphere 5.1
2821 Male, age 75, both hemispheres 4.8
2484 Female, age 94, left hemisphere 4.7
2569 Male, age 61, both hemispheres 2.5
Nucleus of the diagonal band
nTPM: 13.7
1812 Female, age 91, both hemispheres 15.9
2775 Male, age 80, right hemisphere 14.8
2029 Male, age 61, right hemisphere 13.2
2195 Female, age 85, both hemispheres 13.2
1979 Male, age 74, unknown 11.3
Olfactory tubercle
nTPM: 11.5
1846 Male, age 80, right hemisphere 12.7
1998 Female, age 91, both hemispheres 12.2
2487 Female, age 94, left hemisphere 12.2
2856 Male, age 75, right hemisphere 9.1
Putamen
nTPM: 5.4
1937 Female, age 91, right hemisphere 9.0
1838 Male, age 80, right hemisphere 8.8
2466 Female, age 79, unknown 5.2
1829 Male, age 74, unknown 4.3
2482 Female, age 94, left hemisphere 4.0
2647 Male, age 75, left hemisphere 3.7
2489 Female, age 72, unknown 2.7
Septal nuclei
nTPM: 10.7
2031 Female, age 72, unknown 15.3
1960 Male, age 74, unknown 13.7
2009 Female, age 91, both hemispheres 13.5
2629 Female, age 94, right hemisphere 10.8
2059 Female, age 85, both hemispheres 8.9
2394 Male, age 61, left hemisphere 6.8
2199 Male, age 80, right hemisphere 6.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.1
Samples: 246

Max nTPM: 37.7
Min nTPM: 1.3
Std nTPM: 6.9
Median nTPM: 10.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 37.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 36.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 34.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 33.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 31.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 30.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 28.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 26.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 25.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 25.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 25.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.9
Samples: 246

Max nTPM: 61.7
Min nTPM: 2.9
Std nTPM: 14.3
Median nTPM: 28.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 61.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 60.1
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 59.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 57.6
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 57.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 56.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 56.2
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 54.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 54.9
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 54.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 54.2
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Brain - Putamen (basal ganglia)
Average nTPM: 9.0
Samples: 205

Max nTPM: 37.7
Min nTPM: 1.2
Std nTPM: 6.6
Median nTPM: 7.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 37.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 37.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 36.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 29.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 24.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 22.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 21.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 21.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 21.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 20.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 20.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.7
FF:10164-103B2 76 years, female 38.7
Globus pallidus
Scaled Tags Per Million: 7.3
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 2.8
Nucleus accumbens
Scaled Tags Per Million: 20.6
FF:10037-101F1 23-56 years, mixed 20.6
Putamen
Scaled Tags Per Million: 49.3
FF:10176-103C5 60 years, female 49.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.5
Pig sample Sample description nTPM
Caudate
nTPM: 3.0
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.5
Sample A Female 3.3
Sample B Female 2.5
Sample C Male 3.6
Sample D Male 2.6
Putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.8
Sample A Female 2.4
Sample B Female 1.8
Sample C Male 3.7
Sample D Male 2.7
Septum
nTPM: 4.5
Samples: 4

Max nTPM: 5.9
Min nTPM: 2.8
Sample A Female 3.9
Sample B Female 2.8
Sample C Male 5.9
Sample D Male 5.5
Ventral pallidum
nTPM: 3.0
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.5
Sample A Female 3.2
Sample B Female 2.5
Sample C Male 3.6
Sample D Male 2.5

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The Human Protein Atlas

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