MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA:7.2 nTPM
GTEx:7.3 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:3.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.5
1827 Male, age 72, unknown 6.1
1870 Female, age 42, unknown 5.9
2411 Female, age 72, unknown 5.2
1833 Male, age 53, unknown 4.7
2219 Male, age 76, both hemispheres 4.7
2666 Male, age 74, left hemisphere 4.4
1830 Male, age 51, unknown 4.2
2586 Male, age 75, left hemisphere 4.2
2828 Female, age 72, unknown 3.6
2019 Male, age 18, unknown 1.7
Dorsal raphe nucleus
nTPM: 6.2
2047 Male, age 72, unknown 8.3
2298 Female, age 72, unknown 7.8
2016 Female, age 72, unknown 5.1
2750 Male, age 76, both hemispheres 5.1
1828 Male, age 53, unknown 4.7
Inferior colliculus
nTPM: 5.7
2849 Male, age 72, unknown 6.3
2097 Female, age 72, unknown 6.0
1848 Female, age 42, unknown 5.6
1890 Male, age 53, unknown 4.8
Median raphe nucleus
nTPM: 7.2
2220 Male, age 76, midline 7.2
Pedunculopontine tegmental nucleus
nTPM: 5.1
1921 Female, age 85, both hemispheres 6.6
2334 Male, age 80, both hemispheres 5.4
2338 Male, age 61, both hemispheres 3.3
Periaquaductal grey, anterior
nTPM: 5.8
1947 Male, age 18, unknown 6.8
1795 Male, age 51, unknown 5.9
2502 Female, age 75, unknown 4.7
Periaquaductal grey, dorsal
nTPM: 6.0
1840 Male, age 53, unknown 9.2
2850 Male, age 76, both hemispheres 5.7
2464 Female, age 72, unknown 5.3
1831 Male, age 72, unknown 4.0
Periaquaductal grey, lateral
nTPM: 4.9
2053 Male, age 18, unknown 6.4
2140 Male, age 76, both hemispheres 4.6
2272 Male, age 74, both hemispheres 3.7
Pretectal area
nTPM: 4.6
2825 Male, age 18, unknown 8.6
2224 Female, age 72, unknown 8.3
2667 Female, age 75, unknown 5.7
2273 Male, age 74, both hemispheres 4.1
1816 Male, age 51, unknown 4.0
2316 Male, age 76, right hemisphere 4.0
2407 Male, age 75, both hemispheres 3.9
1944 Female, age 72, unknown 3.6
2007 Male, age 72, unknown 3.1
1817 Female, age 42, unknown 2.9
1815 Male, age 53, unknown 2.7
Red nucleus
nTPM: 2.6
2584 Male, age 75, left hemisphere 5.0
2588 Male, age 74, left hemisphere 3.1
1821 Female, age 72, unknown 2.7
1954 Female, age 42, unknown 2.7
2227 Male, age 72, unknown 2.7
2503 Female, age 72, unknown 2.6
2725 Female, age 75, unknown 2.6
2769 Male, age 72, unknown 2.6
2823 Male, age 76, right hemisphere 2.1
1865 Male, age 51, unknown 1.9
1904 Male, age 53, unknown 1.9
2785 Male, age 18, unknown 1.7
Substantia nigra
nTPM: 5.5
2241 Male, age 72, unknown 8.6
1916 Female, age 42, unknown 5.7
2665 Male, age 74, both hemispheres 5.7
1941 Male, age 53, unknown 5.4
1851 Male, age 51, unknown 5.3
2409 Female, age 72, unknown 5.3
2699 Male, age 18, unknown 5.3
2590 Female, age 75, unknown 4.8
1889 Female, age 72, unknown 4.4
2583 Male, age 75, right hemisphere 4.2
Superior colliculus
nTPM: 4.2
1796 Male, age 53, unknown 6.0
1839 Male, age 51, unknown 5.7
2261 Male, age 18, unknown 4.9
2664 Male, age 75, both hemispheres 4.7
1895 Male, age 76, right hemisphere 4.5
2668 Female, age 75, unknown 4.0
2587 Male, age 74, left hemisphere 3.9
2087 Female, age 72, unknown 3.6
1913 Female, age 42, unknown 2.4
1995 Male, age 72, unknown 2.0
Ventral tegmental area
nTPM: 6.1
2021 Male, age 53, unknown 7.3
1915 Female, age 42, unknown 6.8
1942 Male, age 51, unknown 6.0
2223 Female, age 72, unknown 6.0
2218 Male, age 76, both hemispheres 5.3
2410 Female, age 72, unknown 5.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.3
Samples: 139

Max nTPM: 20.5
Min nTPM: 0.8
Std nTPM: 3.7
Median nTPM: 6.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 20.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 18.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 17.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 15.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 15.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 14.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 13.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 13.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 3.1
Sample C Male 4.0
Sample D Male 3.3
Periaqueductal gray
nTPM: 3.7
Samples: 3

Max nTPM: 5.0
Min nTPM: 2.7
Sample B Female 2.7
Sample C Male 5.0
Sample D Male 3.4
Substantia nigra
nTPM: 3.2
Samples: 4

Max nTPM: 4.8
Min nTPM: 1.3
Sample A Female 4.5
Sample B Female 2.1
Sample C Male 4.8
Sample D Male 1.3
Superior colliculi
nTPM: 2.3
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.2
Sample A Female 2.4
Sample B Female 1.2
Sample C Male 3.0
Sample D Male 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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