BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2.9 nTPM
HPA:2.9 nTPM
GTEx:1.5 nTPM
FANTOM5:11.1 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.7
2289 Male, age 61, right hemisphere 2.4
2288 Male, age 75, left hemisphere 2.3
1854 Male, age 80, left hemisphere 1.8
1857 Female, age 85, left hemisphere 1.6
2846 Female, age 79, unknown 1.6
2290 Female, age 72, unknown 1.5
2481 Female, age 94, left hemisphere 1.4
1781 Male, age 74, unknown 1.0
Claustrum
nTPM: 1.9
2392 Female, age 94, both hemispheres 2.6
2292 Female, age 85, both hemispheres 2.4
2284 Female, age 91, both hemispheres 2.1
2645 Female, age 72, unknown 2.1
1956 Male, age 74, unknown 1.7
2568 Male, age 61, both hemispheres 1.7
2198 Male, age 80, both hemispheres 1.6
2196 Female, age 79, unknown 1.5
2491 Male, age 75, both hemispheres 1.3
Globus pallidus, externus
nTPM: 2.2
2567 Female, age 72, unknown 2.9
1996 Male, age 80, right hemisphere 2.1
2395 Male, age 75, both hemispheres 2.1
2646 Male, age 61, right hemisphere 1.9
2772 Female, age 79, unknown 1.9
Globus pallidus, internus
nTPM: 2.9
2111 Female, age 85, right hemisphere 3.9
2778 Female, age 91, both hemispheres 3.2
1818 Male, age 74, unknown 3.0
2566 Female, age 72, unknown 2.9
2037 Male, age 80, right hemisphere 2.6
2287 Male, age 75, right hemisphere 2.3
2483 Female, age 94, right hemisphere 2.2
Nucleus accumbens
nTPM: 1.9
2391 Female, age 94, left hemisphere 2.8
2732 Male, age 80, right hemisphere 2.4
2286 Male, age 75, left hemisphere 2.3
2824 Male, age 61, right hemisphere 2.2
1783 Male, age 74, unknown 1.7
1806 Female, age 85, left hemisphere 1.7
2698 Female, age 72, unknown 1.4
1856 Female, age 91, right hemisphere 0.8
Nucleus basalis of Meynert
nTPM: 2.2
2821 Male, age 75, both hemispheres 2.5
2393 Male, age 80, right hemisphere 2.2
2569 Male, age 61, both hemispheres 2.1
2484 Female, age 94, left hemisphere 2.0
Nucleus of the diagonal band
nTPM: 1.2
2029 Male, age 61, right hemisphere 1.7
2195 Female, age 85, both hemispheres 1.5
2775 Male, age 80, right hemisphere 1.1
1979 Male, age 74, unknown 0.9
1812 Female, age 91, both hemispheres 0.8
Olfactory tubercle
nTPM: 1.3
2856 Male, age 75, right hemisphere 1.8
1846 Male, age 80, right hemisphere 1.4
1998 Female, age 91, both hemispheres 1.1
2487 Female, age 94, left hemisphere 1.1
Putamen
nTPM: 2.0
1829 Male, age 74, unknown 2.5
2489 Female, age 72, unknown 2.1
1838 Male, age 80, right hemisphere 2.0
2482 Female, age 94, left hemisphere 2.0
2647 Male, age 75, left hemisphere 2.0
2466 Female, age 79, unknown 1.9
1937 Female, age 91, right hemisphere 1.6
Septal nuclei
nTPM: 1.3
2199 Male, age 80, right hemisphere 1.6
2394 Male, age 61, left hemisphere 1.5
2059 Female, age 85, both hemispheres 1.4
2009 Female, age 91, both hemispheres 1.2
2031 Female, age 72, unknown 1.2
2629 Female, age 94, right hemisphere 1.1
1960 Male, age 74, unknown 0.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.5
Samples: 246

Max nTPM: 2.6
Min nTPM: 0.7
Std nTPM: 0.3
Median nTPM: 1.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 2.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 2.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.3
Samples: 246

Max nTPM: 2.3
Min nTPM: 0.5
Std nTPM: 0.3
Median nTPM: 1.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 2.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 2.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 2.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 2.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 2.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 2.0
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 2.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 2.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 2.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 1.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 1.9
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Brain - Putamen (basal ganglia)
Average nTPM: 1.4
Samples: 205

Max nTPM: 2.5
Min nTPM: 0.8
Std nTPM: 0.3
Median nTPM: 1.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 2.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 2.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 2.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 2.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 2.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 2.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 2.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 2.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 2.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 2.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 2.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.6
FF:10164-103B2 76 years, female 5.6
Globus pallidus
Scaled Tags Per Million: 11.1
FF:10161-103A8 76 years, female 15.1
FF:10175-103C4 60 years, female 7.1
Nucleus accumbens
Scaled Tags Per Million: 3.8
FF:10037-101F1 23-56 years, mixed 3.8
Putamen
Scaled Tags Per Million: 2.9
FF:10176-103C5 60 years, female 2.9

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