MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.0 nTPM
HPA:41.0 nTPM
GTEx:66.4 nTPM
FANTOM5:76.3 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:63.4 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.5
2586 Male, age 75, left hemisphere 62.6
2666 Male, age 74, left hemisphere 47.2
2828 Female, age 72, unknown 43.4
2019 Male, age 18, unknown 39.5
1827 Male, age 72, unknown 39.1
2219 Male, age 76, both hemispheres 39.1
1870 Female, age 42, unknown 35.5
1833 Male, age 53, unknown 34.0
1830 Male, age 51, unknown 33.9
2411 Female, age 72, unknown 30.6
Dorsal raphe nucleus
nTPM: 30.3
2750 Male, age 76, both hemispheres 35.5
2047 Male, age 72, unknown 32.0
1828 Male, age 53, unknown 31.8
2016 Female, age 72, unknown 27.2
2298 Female, age 72, unknown 25.0
Inferior colliculus
nTPM: 36.9
1890 Male, age 53, unknown 38.5
2849 Male, age 72, unknown 38.5
1848 Female, age 42, unknown 36.7
2097 Female, age 72, unknown 34.0
Median raphe nucleus
nTPM: 28.2
2220 Male, age 76, midline 28.2
Pedunculopontine tegmental nucleus
nTPM: 33.5
1921 Female, age 85, both hemispheres 34.7
2334 Male, age 80, both hemispheres 32.9
2338 Male, age 61, both hemispheres 32.8
Periaquaductal grey, anterior
nTPM: 39.1
1795 Male, age 51, unknown 41.5
2502 Female, age 75, unknown 39.2
1947 Male, age 18, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 31.8
2464 Female, age 72, unknown 35.5
1831 Male, age 72, unknown 34.6
1840 Male, age 53, unknown 33.4
2850 Male, age 76, both hemispheres 23.7
Periaquaductal grey, lateral
nTPM: 32.5
2053 Male, age 18, unknown 35.2
2140 Male, age 76, both hemispheres 31.5
2272 Male, age 74, both hemispheres 30.8
Pretectal area
nTPM: 38.1
1944 Female, age 72, unknown 50.1
1816 Male, age 51, unknown 45.9
2007 Male, age 72, unknown 44.3
2407 Male, age 75, both hemispheres 41.5
1815 Male, age 53, unknown 39.6
1817 Female, age 42, unknown 39.6
2316 Male, age 76, right hemisphere 37.1
2825 Male, age 18, unknown 35.5
2667 Female, age 75, unknown 32.1
2224 Female, age 72, unknown 28.5
2273 Male, age 74, both hemispheres 24.9
Red nucleus
nTPM: 36.3
2584 Male, age 75, left hemisphere 46.5
2588 Male, age 74, left hemisphere 45.2
2785 Male, age 18, unknown 41.7
2227 Male, age 72, unknown 39.1
2769 Male, age 72, unknown 39.1
1865 Male, age 51, unknown 34.1
2503 Female, age 72, unknown 34.1
2725 Female, age 75, unknown 32.9
1904 Male, age 53, unknown 32.3
1954 Female, age 42, unknown 31.8
2823 Male, age 76, right hemisphere 30.8
1821 Female, age 72, unknown 27.9
Substantia nigra
nTPM: 33.4
2583 Male, age 75, right hemisphere 42.9
2665 Male, age 74, both hemispheres 42.6
2590 Female, age 75, unknown 37.9
1941 Male, age 53, unknown 36.5
1889 Female, age 72, unknown 34.0
1916 Female, age 42, unknown 33.9
1851 Male, age 51, unknown 33.4
2699 Male, age 18, unknown 27.2
2241 Male, age 72, unknown 23.3
2409 Female, age 72, unknown 21.9
Superior colliculus
nTPM: 41.0
2664 Male, age 75, both hemispheres 53.2
2087 Female, age 72, unknown 44.9
2668 Female, age 75, unknown 44.6
2261 Male, age 18, unknown 43.8
1796 Male, age 53, unknown 40.4
1913 Female, age 42, unknown 39.4
1839 Male, age 51, unknown 37.1
1895 Male, age 76, right hemisphere 36.9
2587 Male, age 74, left hemisphere 36.4
1995 Male, age 72, unknown 33.6
Ventral tegmental area
nTPM: 30.9
2223 Female, age 72, unknown 35.3
1915 Female, age 42, unknown 32.1
1942 Male, age 51, unknown 31.4
2021 Male, age 53, unknown 29.4
2218 Male, age 76, both hemispheres 28.5
2410 Female, age 72, unknown 28.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.4
Samples: 139

Max nTPM: 115.8
Min nTPM: 35.4
Std nTPM: 12.3
Median nTPM: 65.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 101.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 100.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 95.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 89.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 88.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 87.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 86.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 84.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.3
FF:10158-103A5 76 years, female 76.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.5
Pig sample Sample description nTPM
Midbrain
nTPM: 38.0
Samples: 4

Max nTPM: 52.5
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 28.8
Sample C Male 52.5
Sample D Male 42.5
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 31.2
Min nTPM: 23.4
Sample B Female 26.6
Sample C Male 31.2
Sample D Male 23.4
Substantia nigra
nTPM: 28.6
Samples: 4

Max nTPM: 35.5
Min nTPM: 23.6
Sample A Female 35.5
Sample B Female 23.6
Sample C Male 30.6
Sample D Male 24.6
Superior colliculi
nTPM: 44.5
Samples: 4

Max nTPM: 53.9
Min nTPM: 31.5
Sample A Female 49.5
Sample B Female 31.5
Sample C Male 53.9
Sample D Male 43.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.4
Samples: 4

Max nTPM: 65.4
Min nTPM: 60.6
Sample A Male 64.5
Sample B Male 60.6
Sample C Female 63.1
Sample D Female 65.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
71211353 Antisense, RP_050816_01_C11, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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