MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.9 nTPM
HPA:20.9 nTPM
GTEx:28.7 nTPM
FANTOM5:1.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
2219 Male, age 76, both hemispheres 19.9
2586 Male, age 75, left hemisphere 17.8
2666 Male, age 74, left hemisphere 15.9
1827 Male, age 72, unknown 14.1
2411 Female, age 72, unknown 13.7
1833 Male, age 53, unknown 12.4
1870 Female, age 42, unknown 12.1
2828 Female, age 72, unknown 12.0
1830 Male, age 51, unknown 10.5
2019 Male, age 18, unknown 6.7
Dorsal raphe nucleus
nTPM: 14.7
2298 Female, age 72, unknown 17.7
2047 Male, age 72, unknown 17.3
2750 Male, age 76, both hemispheres 14.7
1828 Male, age 53, unknown 14.0
2016 Female, age 72, unknown 9.9
Inferior colliculus
nTPM: 9.9
2849 Male, age 72, unknown 13.5
1848 Female, age 42, unknown 11.2
1890 Male, age 53, unknown 8.0
2097 Female, age 72, unknown 7.1
Median raphe nucleus
nTPM: 19.9
2220 Male, age 76, midline 19.9
Pedunculopontine tegmental nucleus
nTPM: 14.7
2334 Male, age 80, both hemispheres 17.8
1921 Female, age 85, both hemispheres 16.1
2338 Male, age 61, both hemispheres 10.3
Periaquaductal grey, anterior
nTPM: 18.5
2502 Female, age 75, unknown 22.8
1947 Male, age 18, unknown 16.7
1795 Male, age 51, unknown 16.0
Periaquaductal grey, dorsal
nTPM: 12.9
1840 Male, age 53, unknown 18.3
2850 Male, age 76, both hemispheres 12.9
2464 Female, age 72, unknown 10.9
1831 Male, age 72, unknown 9.4
Periaquaductal grey, lateral
nTPM: 8.8
2140 Male, age 76, both hemispheres 10.7
2053 Male, age 18, unknown 10.6
2272 Male, age 74, both hemispheres 5.3
Pretectal area
nTPM: 11.9
2825 Male, age 18, unknown 15.6
1816 Male, age 51, unknown 14.9
1944 Female, age 72, unknown 14.8
2224 Female, age 72, unknown 13.7
2007 Male, age 72, unknown 13.3
1817 Female, age 42, unknown 12.4
1815 Male, age 53, unknown 12.3
2667 Female, age 75, unknown 12.3
2407 Male, age 75, both hemispheres 9.0
2316 Male, age 76, right hemisphere 7.7
2273 Male, age 74, both hemispheres 4.7
Red nucleus
nTPM: 6.3
2584 Male, age 75, left hemisphere 13.5
2769 Male, age 72, unknown 7.2
2785 Male, age 18, unknown 6.7
2227 Male, age 72, unknown 6.6
2725 Female, age 75, unknown 6.6
2588 Male, age 74, left hemisphere 6.3
1821 Female, age 72, unknown 5.6
1954 Female, age 42, unknown 5.4
2823 Male, age 76, right hemisphere 4.6
1904 Male, age 53, unknown 4.5
2503 Female, age 72, unknown 4.4
1865 Male, age 51, unknown 4.1
Substantia nigra
nTPM: 20.9
2665 Male, age 74, both hemispheres 43.1
1916 Female, age 42, unknown 28.3
1851 Male, age 51, unknown 24.7
1941 Male, age 53, unknown 21.1
2241 Male, age 72, unknown 19.7
2699 Male, age 18, unknown 19.7
2409 Female, age 72, unknown 15.8
1889 Female, age 72, unknown 14.1
2583 Male, age 75, right hemisphere 11.1
2590 Female, age 75, unknown 11.1
Superior colliculus
nTPM: 11.3
2664 Male, age 75, both hemispheres 15.7
1796 Male, age 53, unknown 13.6
2668 Female, age 75, unknown 13.2
2087 Female, age 72, unknown 13.1
1839 Male, age 51, unknown 12.9
1895 Male, age 76, right hemisphere 12.2
2261 Male, age 18, unknown 12.1
2587 Male, age 74, left hemisphere 9.8
1913 Female, age 42, unknown 5.8
1995 Male, age 72, unknown 4.9
Ventral tegmental area
nTPM: 17.4
2218 Male, age 76, both hemispheres 23.0
2410 Female, age 72, unknown 20.9
1915 Female, age 42, unknown 20.6
1942 Male, age 51, unknown 16.5
2021 Male, age 53, unknown 12.8
2223 Female, age 72, unknown 10.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 95.3
Min nTPM: 1.2
Std nTPM: 22.1
Median nTPM: 23.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 95.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 88.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 77.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 75.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 75.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 75.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 73.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 73.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 68.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 68.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.