BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.1 nTPM
HPA:59.1 nTPM
GTEx:51.2 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:43.2 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA027562
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 59.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.6
2290 Female, age 72, unknown 55.4
1781 Male, age 74, unknown 55.2
1854 Male, age 80, left hemisphere 53.6
2289 Male, age 61, right hemisphere 53.5
1857 Female, age 85, left hemisphere 52.4
2846 Female, age 79, unknown 51.9
2481 Female, age 94, left hemisphere 50.4
2288 Male, age 75, left hemisphere 48.0
Claustrum
nTPM: 54.3
2645 Female, age 72, unknown 57.4
1956 Male, age 74, unknown 56.2
2198 Male, age 80, both hemispheres 55.6
2284 Female, age 91, both hemispheres 55.2
2292 Female, age 85, both hemispheres 55.1
2568 Male, age 61, both hemispheres 54.4
2491 Male, age 75, both hemispheres 54.2
2196 Female, age 79, unknown 53.1
2392 Female, age 94, both hemispheres 47.8
Globus pallidus, externus
nTPM: 59.1
2567 Female, age 72, unknown 65.6
2646 Male, age 61, right hemisphere 64.7
2395 Male, age 75, both hemispheres 58.0
1996 Male, age 80, right hemisphere 54.7
2772 Female, age 79, unknown 52.5
Globus pallidus, internus
nTPM: 54.6
2566 Female, age 72, unknown 70.0
2483 Female, age 94, right hemisphere 57.5
1818 Male, age 74, unknown 52.6
2037 Male, age 80, right hemisphere 52.5
2111 Female, age 85, right hemisphere 51.1
2287 Male, age 75, right hemisphere 50.7
2778 Female, age 91, both hemispheres 47.5
Nucleus accumbens
nTPM: 49.3
2732 Male, age 80, right hemisphere 53.0
1856 Female, age 91, right hemisphere 52.9
1783 Male, age 74, unknown 51.8
2698 Female, age 72, unknown 50.3
1806 Female, age 85, left hemisphere 49.5
2824 Male, age 61, right hemisphere 48.7
2286 Male, age 75, left hemisphere 44.0
2391 Female, age 94, left hemisphere 43.9
Nucleus basalis of Meynert
nTPM: 54.0
2569 Male, age 61, both hemispheres 63.0
2393 Male, age 80, right hemisphere 54.9
2484 Female, age 94, left hemisphere 51.2
2821 Male, age 75, both hemispheres 46.7
Nucleus of the diagonal band
nTPM: 49.5
2775 Male, age 80, right hemisphere 53.5
1979 Male, age 74, unknown 50.8
2195 Female, age 85, both hemispheres 49.7
1812 Female, age 91, both hemispheres 48.6
2029 Male, age 61, right hemisphere 45.0
Olfactory tubercle
nTPM: 49.9
2856 Male, age 75, right hemisphere 51.4
1998 Female, age 91, both hemispheres 49.6
2487 Female, age 94, left hemisphere 49.6
1846 Male, age 80, right hemisphere 49.2
Putamen
nTPM: 52.6
2647 Male, age 75, left hemisphere 59.3
2489 Female, age 72, unknown 56.8
1829 Male, age 74, unknown 53.6
2466 Female, age 79, unknown 52.3
1937 Female, age 91, right hemisphere 49.8
2482 Female, age 94, left hemisphere 49.3
1838 Male, age 80, right hemisphere 47.2
Septal nuclei
nTPM: 51.5
2199 Male, age 80, right hemisphere 55.6
1960 Male, age 74, unknown 55.0
2009 Female, age 91, both hemispheres 51.9
2394 Male, age 61, left hemisphere 51.6
2059 Female, age 85, both hemispheres 51.0
2629 Female, age 94, right hemisphere 48.7
2031 Female, age 72, unknown 46.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.6
Samples: 246

Max nTPM: 81.8
Min nTPM: 30.4
Std nTPM: 9.3
Median nTPM: 48.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 81.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 79.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 75.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 75.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 71.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 70.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 69.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 69.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 67.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 67.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 67.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.2
Samples: 246

Max nTPM: 108.1
Min nTPM: 24.1
Std nTPM: 11.3
Median nTPM: 49.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 108.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 101.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 99.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 83.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 78.9
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 77.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 76.5
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 76.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 75.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 72.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 72.6
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Brain - Putamen (basal ganglia)
Average nTPM: 50.5
Samples: 205

Max nTPM: 85.6
Min nTPM: 30.9
Std nTPM: 9.7
Median nTPM: 49.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 85.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 80.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 78.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 76.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 72.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 72.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 70.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 69.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 68.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 67.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 67.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.3
FF:10164-103B2 76 years, female 61.3
Globus pallidus
Scaled Tags Per Million: 41.7
FF:10175-103C4 60 years, female 45.7
FF:10161-103A8 76 years, female 37.7
Nucleus accumbens
Scaled Tags Per Million: 50.7
FF:10037-101F1 23-56 years, mixed 50.7
Putamen
Scaled Tags Per Million: 54.2
FF:10176-103C5 60 years, female 54.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.4
Pig sample Sample description nTPM
Caudate
nTPM: 32.2
Samples: 4

Max nTPM: 40.5
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 36.0
Sample C Male 40.5
Sample D Male 26.5
Putamen
nTPM: 35.4
Samples: 4

Max nTPM: 44.0
Min nTPM: 29.8
Sample A Female 29.8
Sample B Female 31.5
Sample C Male 44.0
Sample D Male 36.4
Septum
nTPM: 28.7
Samples: 4

Max nTPM: 31.0
Min nTPM: 24.6
Sample A Female 30.4
Sample B Female 28.7
Sample C Male 24.6
Sample D Male 31.0
Ventral pallidum
nTPM: 30.6
Samples: 4

Max nTPM: 34.6
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 32.3
Sample C Male 34.6
Sample D Male 28.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.2
Samples: 4

Max nTPM: 47.2
Min nTPM: 39.8
Sample A Male 47.2
Sample B Male 41.4
Sample C Female 44.3
Sample D Female 39.8
Septum
nTPM: 37.9
Samples: 4

Max nTPM: 40.0
Min nTPM: 35.5
Sample A Male 37.9
Sample B Male 40.0
Sample C Female 38.2
Sample D Female 35.5
Ventral forebrain
nTPM: 42.3
Samples: 4

Max nTPM: 44.5
Min nTPM: 40.4
Sample A Male 42.0
Sample B Male 42.3
Sample C Female 40.4
Sample D Female 44.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
75198190 Antisense, RP_060502_02_B06, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.3
75198190 Antisense, RP_060502_02_B06, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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