BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:6.7 nTPM
FANTOM5:23.4 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.9
1857 Female, age 85, left hemisphere 4.8
2481 Female, age 94, left hemisphere 4.4
1854 Male, age 80, left hemisphere 4.1
2288 Male, age 75, left hemisphere 4.0
2290 Female, age 72, unknown 4.0
2846 Female, age 79, unknown 3.5
1781 Male, age 74, unknown 3.4
2289 Male, age 61, right hemisphere 3.1
Claustrum
nTPM: 2.9
2392 Female, age 94, both hemispheres 3.6
1956 Male, age 74, unknown 3.3
2284 Female, age 91, both hemispheres 3.1
2491 Male, age 75, both hemispheres 3.1
2196 Female, age 79, unknown 2.8
2198 Male, age 80, both hemispheres 2.7
2568 Male, age 61, both hemispheres 2.7
2645 Female, age 72, unknown 2.7
2292 Female, age 85, both hemispheres 2.6
Globus pallidus, externus
nTPM: 2.2
2395 Male, age 75, both hemispheres 2.8
1996 Male, age 80, right hemisphere 2.2
2646 Male, age 61, right hemisphere 2.1
2567 Female, age 72, unknown 2.0
2772 Female, age 79, unknown 2.0
Globus pallidus, internus
nTPM: 2.6
2287 Male, age 75, right hemisphere 3.4
2483 Female, age 94, right hemisphere 2.8
2778 Female, age 91, both hemispheres 2.8
2037 Male, age 80, right hemisphere 2.6
2111 Female, age 85, right hemisphere 2.4
1818 Male, age 74, unknown 2.2
2566 Female, age 72, unknown 2.1
Nucleus accumbens
nTPM: 3.9
2391 Female, age 94, left hemisphere 4.6
1806 Female, age 85, left hemisphere 4.3
1856 Female, age 91, right hemisphere 4.1
2824 Male, age 61, right hemisphere 4.1
2286 Male, age 75, left hemisphere 3.8
2698 Female, age 72, unknown 3.8
1783 Male, age 74, unknown 3.3
2732 Male, age 80, right hemisphere 2.9
Nucleus basalis of Meynert
nTPM: 2.8
2393 Male, age 80, right hemisphere 4.1
2821 Male, age 75, both hemispheres 3.1
2484 Female, age 94, left hemisphere 2.5
2569 Male, age 61, both hemispheres 1.5
Nucleus of the diagonal band
nTPM: 3.4
2195 Female, age 85, both hemispheres 4.0
2775 Male, age 80, right hemisphere 3.6
1812 Female, age 91, both hemispheres 3.3
1979 Male, age 74, unknown 3.2
2029 Male, age 61, right hemisphere 2.7
Olfactory tubercle
nTPM: 3.6
2856 Male, age 75, right hemisphere 4.0
1846 Male, age 80, right hemisphere 3.6
2487 Female, age 94, left hemisphere 3.6
1998 Female, age 91, both hemispheres 3.0
Putamen
nTPM: 3.2
1838 Male, age 80, right hemisphere 4.2
1937 Female, age 91, right hemisphere 3.8
2482 Female, age 94, left hemisphere 3.3
1829 Male, age 74, unknown 3.1
2466 Female, age 79, unknown 3.0
2489 Female, age 72, unknown 2.6
2647 Male, age 75, left hemisphere 2.4
Septal nuclei
nTPM: 3.2
2629 Female, age 94, right hemisphere 4.3
1960 Male, age 74, unknown 3.7
2031 Female, age 72, unknown 3.7
2009 Female, age 91, both hemispheres 3.5
2199 Male, age 80, right hemisphere 2.9
2059 Female, age 85, both hemispheres 2.8
2394 Male, age 61, left hemisphere 2.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.0
Samples: 246

Max nTPM: 15.1
Min nTPM: 1.2
Std nTPM: 2.2
Median nTPM: 4.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 15.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 14.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 12.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 10.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 10.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 10.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 9.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 9.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 9.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 9.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 9.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 20.7
Min nTPM: 1.5
Std nTPM: 3.2
Median nTPM: 6.2
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 20.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 20.3
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 18.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 18.0
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 16.3
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 15.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 15.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 14.7
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 13.6
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 13.5
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 13.4
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Brain - Putamen (basal ganglia)
Average nTPM: 4.6
Samples: 205

Max nTPM: 22.2
Min nTPM: 1.0
Std nTPM: 2.6
Median nTPM: 4.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 22.2
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 15.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 14.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 12.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 12.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 11.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 10.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 10.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 10.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 9.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 9.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.7
FF:10164-103B2 76 years, female 12.7
Globus pallidus
Scaled Tags Per Million: 10.0
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 8.3
Nucleus accumbens
Scaled Tags Per Million: 8.0
FF:10037-101F1 23-56 years, mixed 8.0
Putamen
Scaled Tags Per Million: 23.4
FF:10176-103C5 60 years, female 23.4

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The Human Protein Atlas

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