BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.8 nTPM
HPA:5.8 nTPM
GTEx:13.6 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Mouse:11.7 nTPM
Allen mouse:6.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.9
2289 Male, age 61, right hemisphere 6.6
2481 Female, age 94, left hemisphere 5.1
1781 Male, age 74, unknown 5.0
2288 Male, age 75, left hemisphere 5.0
2290 Female, age 72, unknown 4.6
1854 Male, age 80, left hemisphere 4.5
2846 Female, age 79, unknown 4.3
1857 Female, age 85, left hemisphere 3.7
Claustrum
nTPM: 5.8
2292 Female, age 85, both hemispheres 7.1
2491 Male, age 75, both hemispheres 6.8
2568 Male, age 61, both hemispheres 6.5
2284 Female, age 91, both hemispheres 6.2
2198 Male, age 80, both hemispheres 5.9
1956 Male, age 74, unknown 5.5
2196 Female, age 79, unknown 5.3
2645 Female, age 72, unknown 4.9
2392 Female, age 94, both hemispheres 3.9
Globus pallidus, externus
nTPM: 5.7
2567 Female, age 72, unknown 8.4
2646 Male, age 61, right hemisphere 7.0
2772 Female, age 79, unknown 4.5
2395 Male, age 75, both hemispheres 4.4
1996 Male, age 80, right hemisphere 4.3
Globus pallidus, internus
nTPM: 5.2
2111 Female, age 85, right hemisphere 7.2
2566 Female, age 72, unknown 6.9
2778 Female, age 91, both hemispheres 5.2
2287 Male, age 75, right hemisphere 4.9
2483 Female, age 94, right hemisphere 4.5
1818 Male, age 74, unknown 4.2
2037 Male, age 80, right hemisphere 3.6
Nucleus accumbens
nTPM: 4.6
2732 Male, age 80, right hemisphere 5.4
2391 Female, age 94, left hemisphere 5.1
1806 Female, age 85, left hemisphere 5.0
1783 Male, age 74, unknown 4.5
2824 Male, age 61, right hemisphere 4.4
1856 Female, age 91, right hemisphere 4.3
2286 Male, age 75, left hemisphere 4.3
2698 Female, age 72, unknown 3.5
Nucleus basalis of Meynert
nTPM: 5.5
2484 Female, age 94, left hemisphere 6.4
2569 Male, age 61, both hemispheres 6.2
2821 Male, age 75, both hemispheres 5.3
2393 Male, age 80, right hemisphere 4.2
Nucleus of the diagonal band
nTPM: 4.4
2195 Female, age 85, both hemispheres 5.0
1979 Male, age 74, unknown 4.7
2029 Male, age 61, right hemisphere 4.4
2775 Male, age 80, right hemisphere 4.3
1812 Female, age 91, both hemispheres 3.7
Olfactory tubercle
nTPM: 4.8
2487 Female, age 94, left hemisphere 5.8
1998 Female, age 91, both hemispheres 5.3
2856 Male, age 75, right hemisphere 4.3
1846 Male, age 80, right hemisphere 3.8
Putamen
nTPM: 5.7
2647 Male, age 75, left hemisphere 7.6
2489 Female, age 72, unknown 6.9
2466 Female, age 79, unknown 6.4
2482 Female, age 94, left hemisphere 5.2
1829 Male, age 74, unknown 5.1
1937 Female, age 91, right hemisphere 4.8
1838 Male, age 80, right hemisphere 4.0
Septal nuclei
nTPM: 4.4
1960 Male, age 74, unknown 5.8
2031 Female, age 72, unknown 5.0
2199 Male, age 80, right hemisphere 4.8
2059 Female, age 85, both hemispheres 4.7
2009 Female, age 91, both hemispheres 3.7
2629 Female, age 94, right hemisphere 3.5
2394 Male, age 61, left hemisphere 3.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.0
Samples: 246

Max nTPM: 26.3
Min nTPM: 3.3
Std nTPM: 3.2
Median nTPM: 11.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 26.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 22.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 21.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 19.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 19.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 19.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 19.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 18.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 18.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 18.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 18.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.8
Samples: 246

Max nTPM: 21.8
Min nTPM: 4.8
Std nTPM: 2.8
Median nTPM: 11.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 21.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 21.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 19.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 19.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 19.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 17.5
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 17.4
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 17.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 17.1
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 17.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 16.9
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Brain - Putamen (basal ganglia)
Average nTPM: 13.6
Samples: 205

Max nTPM: 33.8
Min nTPM: 5.0
Std nTPM: 3.7
Median nTPM: 13.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 33.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 24.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 23.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 22.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 20.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 20.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 20.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 20.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 19.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 19.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 19.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.6
FF:10164-103B2 76 years, female 21.6
Globus pallidus
Scaled Tags Per Million: 26.1
FF:10161-103A8 76 years, female 33.4
FF:10175-103C4 60 years, female 18.9
Nucleus accumbens
Scaled Tags Per Million: 15.4
FF:10037-101F1 23-56 years, mixed 15.4
Putamen
Scaled Tags Per Million: 18.3
FF:10176-103C5 60 years, female 18.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.8
Samples: 4

Max nTPM: 12.2
Min nTPM: 11.1
Sample A Male 11.1
Sample B Male 12.2
Sample C Female 11.7
Sample D Female 12.0
Septum
nTPM: 10.6
Samples: 4

Max nTPM: 11.4
Min nTPM: 10.1
Sample A Male 10.2
Sample B Male 10.1
Sample C Female 10.6
Sample D Female 11.4
Ventral forebrain
nTPM: 10.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.9
Sample A Male 9.9
Sample B Male 10.1
Sample C Female 11.9
Sample D Female 10.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.0
671253 Antisense, RP_040914_02_B12, Mouse strain C57BL/6J (56 days, male) 6.0
Pallidum
Expression energy: 5.5
671253 Antisense, RP_040914_02_B12, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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