BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:62.2 nTPM
HPA:62.2 nTPM
GTEx:68.6 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:58.9 nTPM
Mouse:100.5 nTPM
Allen mouse:5.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038350
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.9
2290 Female, age 72, unknown 45.6
2481 Female, age 94, left hemisphere 45.4
2288 Male, age 75, left hemisphere 44.4
1857 Female, age 85, left hemisphere 43.2
2289 Male, age 61, right hemisphere 42.2
1854 Male, age 80, left hemisphere 42.0
1781 Male, age 74, unknown 40.3
2846 Female, age 79, unknown 40.0
Claustrum
nTPM: 50.8
2491 Male, age 75, both hemispheres 54.7
2198 Male, age 80, both hemispheres 53.0
2292 Female, age 85, both hemispheres 52.9
2568 Male, age 61, both hemispheres 52.0
2645 Female, age 72, unknown 51.8
1956 Male, age 74, unknown 49.4
2284 Female, age 91, both hemispheres 48.1
2196 Female, age 79, unknown 47.9
2392 Female, age 94, both hemispheres 47.2
Globus pallidus, externus
nTPM: 62.2
2567 Female, age 72, unknown 70.9
1996 Male, age 80, right hemisphere 64.1
2646 Male, age 61, right hemisphere 61.6
2772 Female, age 79, unknown 60.5
2395 Male, age 75, both hemispheres 53.7
Globus pallidus, internus
nTPM: 61.1
2483 Female, age 94, right hemisphere 65.3
2566 Female, age 72, unknown 64.6
2287 Male, age 75, right hemisphere 63.1
2111 Female, age 85, right hemisphere 62.6
2778 Female, age 91, both hemispheres 59.3
1818 Male, age 74, unknown 57.7
2037 Male, age 80, right hemisphere 55.0
Nucleus accumbens
nTPM: 43.5
2391 Female, age 94, left hemisphere 46.5
2286 Male, age 75, left hemisphere 45.2
2732 Male, age 80, right hemisphere 45.0
1806 Female, age 85, left hemisphere 44.5
1783 Male, age 74, unknown 44.0
2698 Female, age 72, unknown 43.8
2824 Male, age 61, right hemisphere 42.3
1856 Female, age 91, right hemisphere 36.8
Nucleus basalis of Meynert
nTPM: 48.2
2569 Male, age 61, both hemispheres 64.4
2484 Female, age 94, left hemisphere 45.3
2821 Male, age 75, both hemispheres 42.6
2393 Male, age 80, right hemisphere 40.6
Nucleus of the diagonal band
nTPM: 43.7
2029 Male, age 61, right hemisphere 46.0
2775 Male, age 80, right hemisphere 45.9
1812 Female, age 91, both hemispheres 44.2
2195 Female, age 85, both hemispheres 43.6
1979 Male, age 74, unknown 38.9
Olfactory tubercle
nTPM: 43.9
1846 Male, age 80, right hemisphere 46.1
2487 Female, age 94, left hemisphere 44.6
1998 Female, age 91, both hemispheres 43.1
2856 Male, age 75, right hemisphere 41.8
Putamen
nTPM: 45.4
2647 Male, age 75, left hemisphere 55.8
2489 Female, age 72, unknown 49.3
2482 Female, age 94, left hemisphere 49.1
1829 Male, age 74, unknown 45.3
2466 Female, age 79, unknown 40.3
1937 Female, age 91, right hemisphere 40.0
1838 Male, age 80, right hemisphere 38.2
Septal nuclei
nTPM: 42.7
2059 Female, age 85, both hemispheres 46.9
2394 Male, age 61, left hemisphere 44.7
1960 Male, age 74, unknown 44.4
2031 Female, age 72, unknown 41.6
2199 Male, age 80, right hemisphere 40.8
2629 Female, age 94, right hemisphere 40.5
2009 Female, age 91, both hemispheres 39.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.4
Samples: 246

Max nTPM: 117.7
Min nTPM: 29.8
Std nTPM: 14.9
Median nTPM: 56.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 117.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 114.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 110.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 109.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 108.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 103.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 101.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 100.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 98.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 94.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 93.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.3
Samples: 246

Max nTPM: 105.7
Min nTPM: 24.3
Std nTPM: 13.9
Median nTPM: 55.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 105.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 98.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 98.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 97.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 95.6
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 95.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 94.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 93.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 92.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 90.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 90.4
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Brain - Putamen (basal ganglia)
Average nTPM: 68.6
Samples: 205

Max nTPM: 139.1
Min nTPM: 30.6
Std nTPM: 18.4
Median nTPM: 65.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 139.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 127.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 122.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 120.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 115.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 115.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 110.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 108.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 106.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 103.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 101.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 53.2
FF:10164-103B2 76 years, female 53.2
Globus pallidus
Scaled Tags Per Million: 56.6
FF:10161-103A8 76 years, female 62.6
FF:10175-103C4 60 years, female 50.5
Nucleus accumbens
Scaled Tags Per Million: 68.9
FF:10037-101F1 23-56 years, mixed 68.9
Putamen
Scaled Tags Per Million: 44.0
FF:10176-103C5 60 years, female 44.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 58.9
Pig sample Sample description nTPM
Caudate
nTPM: 38.9
Samples: 4

Max nTPM: 39.9
Min nTPM: 36.2
Sample A Female 39.9
Sample B Female 39.4
Sample C Male 39.9
Sample D Male 36.2
Putamen
nTPM: 58.9
Samples: 4

Max nTPM: 89.3
Min nTPM: 38.8
Sample A Female 89.3
Sample B Female 38.8
Sample C Male 51.6
Sample D Male 55.8
Septum
nTPM: 55.9
Samples: 4

Max nTPM: 66.5
Min nTPM: 46.5
Sample A Female 56.8
Sample B Female 46.5
Sample C Male 66.5
Sample D Male 53.6
Ventral pallidum
nTPM: 54.8
Samples: 4

Max nTPM: 71.0
Min nTPM: 38.8
Sample A Female 38.8
Sample B Female 50.7
Sample C Male 71.0
Sample D Male 58.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 100.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 100.5
Samples: 4

Max nTPM: 107.7
Min nTPM: 96.0
Sample A Male 100.0
Sample B Male 107.7
Sample C Female 96.0
Sample D Female 98.3
Septum
nTPM: 70.7
Samples: 4

Max nTPM: 80.4
Min nTPM: 60.2
Sample A Male 78.1
Sample B Male 60.2
Sample C Female 63.9
Sample D Female 80.4
Ventral forebrain
nTPM: 84.9
Samples: 4

Max nTPM: 91.0
Min nTPM: 78.0
Sample A Male 91.0
Sample B Male 85.8
Sample C Female 78.0
Sample D Female 84.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.7
70542909 Antisense, RP_050324_04_G06, Mouse strain C57BL/6J (56 days, male) 4.7
Pallidum
Expression energy: 5.6
70542909 Antisense, RP_050324_04_G06, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

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