MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.8 nTPM
HPA:59.8 nTPM
GTEx:81.0 nTPM
FANTOM5:79.8 Scaled Tags Per Million
Pig:89.2 nTPM
Mouse:65.6 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.7
2586 Male, age 75, left hemisphere 69.8
2019 Male, age 18, unknown 59.5
2411 Female, age 72, unknown 57.5
2828 Female, age 72, unknown 56.6
1870 Female, age 42, unknown 55.3
1830 Male, age 51, unknown 54.9
2666 Male, age 74, left hemisphere 53.6
1833 Male, age 53, unknown 52.1
2219 Male, age 76, both hemispheres 50.1
1827 Male, age 72, unknown 47.1
Dorsal raphe nucleus
nTPM: 51.8
1828 Male, age 53, unknown 55.3
2047 Male, age 72, unknown 53.3
2750 Male, age 76, both hemispheres 52.5
2016 Female, age 72, unknown 52.0
2298 Female, age 72, unknown 45.7
Inferior colliculus
nTPM: 46.8
1848 Female, age 42, unknown 49.7
2849 Male, age 72, unknown 47.1
1890 Male, age 53, unknown 47.0
2097 Female, age 72, unknown 43.4
Median raphe nucleus
nTPM: 51.2
2220 Male, age 76, midline 51.2
Pedunculopontine tegmental nucleus
nTPM: 48.4
2334 Male, age 80, both hemispheres 50.5
2338 Male, age 61, both hemispheres 49.4
1921 Female, age 85, both hemispheres 45.4
Periaquaductal grey, anterior
nTPM: 49.0
2502 Female, age 75, unknown 54.1
1795 Male, age 51, unknown 46.9
1947 Male, age 18, unknown 46.0
Periaquaductal grey, dorsal
nTPM: 45.5
2464 Female, age 72, unknown 51.2
1840 Male, age 53, unknown 46.8
1831 Male, age 72, unknown 45.7
2850 Male, age 76, both hemispheres 38.4
Periaquaductal grey, lateral
nTPM: 43.6
2053 Male, age 18, unknown 46.4
2272 Male, age 74, both hemispheres 44.7
2140 Male, age 76, both hemispheres 39.7
Pretectal area
nTPM: 46.3
2407 Male, age 75, both hemispheres 56.4
2825 Male, age 18, unknown 48.7
1817 Female, age 42, unknown 48.5
2667 Female, age 75, unknown 48.3
2007 Male, age 72, unknown 46.4
1815 Male, age 53, unknown 46.0
2273 Male, age 74, both hemispheres 44.9
1944 Female, age 72, unknown 43.6
2224 Female, age 72, unknown 42.4
2316 Male, age 76, right hemisphere 42.3
1816 Male, age 51, unknown 41.7
Red nucleus
nTPM: 59.8
2588 Male, age 74, left hemisphere 65.8
2769 Male, age 72, unknown 63.8
1865 Male, age 51, unknown 63.5
2227 Male, age 72, unknown 63.4
2503 Female, age 72, unknown 62.7
2584 Male, age 75, left hemisphere 60.8
1904 Male, age 53, unknown 60.5
2785 Male, age 18, unknown 60.4
1954 Female, age 42, unknown 58.5
1821 Female, age 72, unknown 57.4
2725 Female, age 75, unknown 51.1
2823 Male, age 76, right hemisphere 50.3
Substantia nigra
nTPM: 51.7
2583 Male, age 75, right hemisphere 58.4
1851 Male, age 51, unknown 55.7
2590 Female, age 75, unknown 54.0
2665 Male, age 74, both hemispheres 53.0
1916 Female, age 42, unknown 52.9
2409 Female, age 72, unknown 52.1
1941 Male, age 53, unknown 49.9
2699 Male, age 18, unknown 48.2
1889 Female, age 72, unknown 47.2
2241 Male, age 72, unknown 45.7
Superior colliculus
nTPM: 50.3
2664 Male, age 75, both hemispheres 61.6
1995 Male, age 72, unknown 55.1
1839 Male, age 51, unknown 52.9
2587 Male, age 74, left hemisphere 52.0
1913 Female, age 42, unknown 51.9
1796 Male, age 53, unknown 48.6
2668 Female, age 75, unknown 47.7
2261 Male, age 18, unknown 46.2
2087 Female, age 72, unknown 44.4
1895 Male, age 76, right hemisphere 42.3
Ventral tegmental area
nTPM: 53.0
2223 Female, age 72, unknown 61.4
2410 Female, age 72, unknown 57.0
2021 Male, age 53, unknown 52.4
1915 Female, age 42, unknown 52.0
1942 Male, age 51, unknown 50.4
2218 Male, age 76, both hemispheres 44.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.0
Samples: 139

Max nTPM: 139.1
Min nTPM: 34.0
Std nTPM: 21.9
Median nTPM: 78.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 139.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 136.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 136.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 133.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 128.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 127.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 124.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 122.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 121.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 121.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 120.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.8
FF:10158-103A5 76 years, female 79.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.2
Pig sample Sample description nTPM
Midbrain
nTPM: 89.2
Samples: 4

Max nTPM: 117.7
Min nTPM: 65.2
Sample A Female 117.7
Sample B Female 80.9
Sample C Male 93.1
Sample D Male 65.2
Periaqueductal gray
nTPM: 68.3
Samples: 3

Max nTPM: 71.5
Min nTPM: 66.6
Sample B Female 71.5
Sample C Male 66.8
Sample D Male 66.6
Substantia nigra
nTPM: 80.9
Samples: 4

Max nTPM: 96.0
Min nTPM: 69.9
Sample A Female 96.0
Sample B Female 69.9
Sample C Male 71.3
Sample D Male 86.5
Superior colliculi
nTPM: 81.8
Samples: 4

Max nTPM: 92.7
Min nTPM: 66.5
Sample A Female 92.7
Sample B Female 66.5
Sample C Male 85.9
Sample D Male 82.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 67.3
Min nTPM: 62.1
Sample A Male 66.1
Sample B Male 62.1
Sample C Female 67.1
Sample D Female 67.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
70542909 Antisense, RP_050324_04_G06, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.