HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA:20.0 nTPM
GTEx:12.0 nTPM
FANTOM5:12.7 Scaled Tags Per Million
Pig:19.5 nTPM
Mouse:17.5 nTPM
Allen mouse:6.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Hippocampus
nTPM: 16.2
2148 Female, age 91, left hemisphere 34.7
1855 Male, age 76, left hemisphere 18.2
1898 Male, age 80, left hemisphere 14.3
2621 Female, age 67, right hemisphere 13.0
2529 Female, age 94, left hemisphere 9.1
1911 Female, age 85, right hemisphere 8.2
Dentate gyrus
nTPM: 20.0
1927 Female, age 91, both hemispheres 34.0
2531 Female, age 67, both hemispheres 25.3
2528 Male, age 74, both hemispheres 17.2
2010 Male, age 76, both hemispheres 15.6
2530 Female, age 94, left hemisphere 15.3
2246 Female, age 85, both hemispheres 12.7
Entorhinal gyrus
nTPM: 8.9
2613 Female, age 94, left hemisphere 10.4
2686 Male, age 75, right hemisphere 10.0
2764 Male, age 80, right hemisphere 9.8
1787 Male, age 76, left hemisphere 9.0
1938 Female, age 85, left hemisphere 8.6
2117 Female, age 91, right hemisphere 5.8
Hippocampus, CA1
nTPM: 15.6
2045 Male, age 76, both hemispheres 25.4
1873 Female, age 85, both hemispheres 22.6
2749 Male, age 80, left hemisphere 14.2
2082 Female, age 91, right hemisphere 8.4
2527 Male, age 74, both hemispheres 7.4
Hippocampus, CA2
nTPM: 12.9
1892 Male, age 76, both hemispheres 22.0
1963 Male, age 80, left hemisphere 22.0
2437 Female, age 94, left hemisphere 12.2
1940 Female, age 85, left hemisphere 9.0
2249 Male, age 74, both hemispheres 7.9
2113 Female, age 91, right hemisphere 4.1
Hippocampus, CA3
nTPM: 19.2
2620 Female, age 94, left hemisphere 36.7
2861 Female, age 67, both hemispheres 23.4
2436 Male, age 74, both hemispheres 22.7
1867 Male, age 76, both hemispheres 13.7
1891 Female, age 85, both hemispheres 9.5
2137 Male, age 80, left hemisphere 9.2
Parahippocampal cortex
nTPM: 10.1
2250 Female, age 67, right hemisphere 13.6
1850 Male, age 80, both hemispheres 13.5
2693 Female, age 94, both hemispheres 12.4
2622 Female, age 67, right hemisphere 11.8
2245 Female, age 91, both hemispheres 11.3
1990 Female, age 91, right hemisphere 10.1
2532 Female, age 72, left hemisphere 8.2
1933 Female, age 85, both hemispheres 7.0
2018 Male, age 76, both hemispheres 6.4
2692 Male, age 74, both hemispheres 6.3
Perirhinal gyrus
nTPM: 13.2
2521 Female, age 94, right hemisphere 19.1
1847 Female, age 91, left hemisphere 15.3
1794 Male, age 80, right hemisphere 12.0
1841 Female, age 85, right hemisphere 11.5
2848 Male, age 76, right hemisphere 8.0
Subiculum
nTPM: 6.8
2729 Female, age 91, right hemisphere 15.8
2619 Male, age 74, both hemispheres 8.8
1977 Female, age 85, both hemispheres 7.6
2438 Female, age 94, left hemisphere 4.3
1901 Male, age 80, both hemispheres 2.8
2042 Male, age 76, both hemispheres 1.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.0
Samples: 197

Max nTPM: 44.1
Min nTPM: 2.5
Std nTPM: 7.8
Median nTPM: 9.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 44.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 42.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 35.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 34.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 31.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 31.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 30.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 30.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 28.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 28.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 27.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.7
FF:10153-102I9 76 years, female 17.1
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 16.5
Samples: 4

Max nTPM: 20.6
Min nTPM: 10.1
Sample A Female 20.6
Sample B Female 17.7
Sample C Male 10.1
Sample D Male 17.4
Entorhinal cortex
nTPM: 19.5
Samples: 4

Max nTPM: 22.2
Min nTPM: 14.9
Sample A Female 20.7
Sample B Female 22.2
Sample C Male 20.3
Sample D Male 14.9
Subiculum
nTPM: 12.0
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.2
Sample A Female 15.8
Sample B Female 10.2
Sample C Male 11.2
Sample D Male 10.7
Ventral hippocampus
nTPM: 14.7
Samples: 4

Max nTPM: 18.7
Min nTPM: 10.9
Sample A Female 17.0
Sample B Female 10.9
Sample C Male 18.7
Sample D Male 12.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.6
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.4
Sample A Male 17.7
Sample B Male 14.6
Sample C Female 14.4
Sample D Female 15.6
Hippocampal formation
nTPM: 17.5
Samples: 4

Max nTPM: 22.1
Min nTPM: 13.6
Sample A Male 13.6
Sample B Male 19.3
Sample C Female 22.1
Sample D Female 15.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.8
72109379 Antisense, RP_050712_01_B07, Mouse strain C57BL/6J (56 days, male) 9.7
71161387 Antisense, RP_050810_01_B05, Mouse strain C57BL/6J (56 days, male) 7.7
70793995 Antisense, RP_050712_01_B07, Mouse strain C57BL/6J (56 days, male) 7.6
71495666 Antisense, RP_050913_03_D05, Mouse strain C57BL/6J (56 days, male) 2.9
73636040 Antisense, RP_050913_03_D05, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.