MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA:5.7 nTPM
GTEx:9.0 nTPM
FANTOM5:3.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.4
2219 Male, age 76, both hemispheres 5.1
1833 Male, age 53, unknown 4.9
1830 Male, age 51, unknown 4.8
2019 Male, age 18, unknown 4.7
2828 Female, age 72, unknown 4.3
1827 Male, age 72, unknown 4.2
1870 Female, age 42, unknown 4.2
2666 Male, age 74, left hemisphere 4.2
2586 Male, age 75, left hemisphere 4.1
2411 Female, age 72, unknown 4.0
Dorsal raphe nucleus
nTPM: 4.4
2750 Male, age 76, both hemispheres 5.2
1828 Male, age 53, unknown 4.7
2016 Female, age 72, unknown 4.6
2047 Male, age 72, unknown 3.9
2298 Female, age 72, unknown 3.7
Inferior colliculus
nTPM: 4.2
1890 Male, age 53, unknown 4.3
1848 Female, age 42, unknown 4.2
2097 Female, age 72, unknown 4.1
2849 Male, age 72, unknown 4.1
Median raphe nucleus
nTPM: 5.7
2220 Male, age 76, midline 5.7
Pedunculopontine tegmental nucleus
nTPM: 5.2
2338 Male, age 61, both hemispheres 6.8
2334 Male, age 80, both hemispheres 4.8
1921 Female, age 85, both hemispheres 3.9
Periaquaductal grey, anterior
nTPM: 4.4
1947 Male, age 18, unknown 4.8
2502 Female, age 75, unknown 4.2
1795 Male, age 51, unknown 4.1
Periaquaductal grey, dorsal
nTPM: 4.2
1831 Male, age 72, unknown 4.6
2850 Male, age 76, both hemispheres 4.3
1840 Male, age 53, unknown 4.0
2464 Female, age 72, unknown 3.8
Periaquaductal grey, lateral
nTPM: 4.4
2272 Male, age 74, both hemispheres 4.6
2053 Male, age 18, unknown 4.4
2140 Male, age 76, both hemispheres 4.4
Pretectal area
nTPM: 4.7
2407 Male, age 75, both hemispheres 7.3
2316 Male, age 76, right hemisphere 5.2
1815 Male, age 53, unknown 4.7
2007 Male, age 72, unknown 4.7
1817 Female, age 42, unknown 4.4
1944 Female, age 72, unknown 4.4
2273 Male, age 74, both hemispheres 4.4
2825 Male, age 18, unknown 4.4
2667 Female, age 75, unknown 4.2
1816 Male, age 51, unknown 4.0
2224 Female, age 72, unknown 3.5
Red nucleus
nTPM: 4.7
1865 Male, age 51, unknown 5.5
2584 Male, age 75, left hemisphere 5.2
2725 Female, age 75, unknown 5.2
2503 Female, age 72, unknown 5.1
1821 Female, age 72, unknown 5.0
1904 Male, age 53, unknown 4.6
2227 Male, age 72, unknown 4.6
1954 Female, age 42, unknown 4.5
2823 Male, age 76, right hemisphere 4.5
2769 Male, age 72, unknown 4.4
2785 Male, age 18, unknown 4.4
2588 Male, age 74, left hemisphere 3.6
Substantia nigra
nTPM: 5.6
2665 Male, age 74, both hemispheres 6.5
2241 Male, age 72, unknown 6.2
2409 Female, age 72, unknown 6.2
2583 Male, age 75, right hemisphere 6.1
2590 Female, age 75, unknown 6.0
1851 Male, age 51, unknown 5.4
2699 Male, age 18, unknown 5.4
1916 Female, age 42, unknown 5.0
1941 Male, age 53, unknown 4.6
1889 Female, age 72, unknown 4.2
Superior colliculus
nTPM: 4.5
1913 Female, age 42, unknown 5.2
2587 Male, age 74, left hemisphere 4.8
2664 Male, age 75, both hemispheres 4.7
1995 Male, age 72, unknown 4.6
1895 Male, age 76, right hemisphere 4.4
1796 Male, age 53, unknown 4.3
1839 Male, age 51, unknown 4.3
2087 Female, age 72, unknown 4.3
2261 Male, age 18, unknown 4.3
2668 Female, age 75, unknown 4.2
Ventral tegmental area
nTPM: 4.7
2218 Male, age 76, both hemispheres 5.0
2021 Male, age 53, unknown 4.9
1942 Male, age 51, unknown 4.8
2410 Female, age 72, unknown 4.7
1915 Female, age 42, unknown 4.5
2223 Female, age 72, unknown 4.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 65.6
Min nTPM: 0.3
Std nTPM: 11.6
Median nTPM: 4.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 65.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 50.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 47.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 45.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 41.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 41.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 41.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 39.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 38.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 33.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 31.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.8
FF:10158-103A5 76 years, female 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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