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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:145.5 nTPM
HPA:145.5 nTPM
GTEx:104.0 nTPM
FANTOM5:257.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 145.5
Sample id Sample description nTPM
Amygdala
nTPM: 127.9
2517 Female, age 94, left hemisphere 137.9
2695 Female, age 67, right hemisphere 134.6
2514 Male, age 75, right hemisphere 129.4
2814 Male, age 76, right hemisphere 126.5
1987 Female, age 91, left hemisphere 111.4
Basal amygdala
nTPM: 145.5
2609 Male, age 75, right hemisphere 159.4
2243 Female, age 91, right hemisphere 155.3
2685 Female, age 94, left hemisphere 154.1
2110 Male, age 80, left hemisphere 143.2
1955 Male, age 76, both hemispheres 139.7
2827 Female, age 67, right hemisphere 121.3
Central amygdala
nTPM: 126.6
2239 Male, age 80, left hemisphere 138.6
2826 Female, age 94, left hemisphere 138.5
1905 Male, age 76, both hemispheres 126.4
2515 Male, age 75, right hemisphere 125.8
2701 Female, age 91, right hemisphere 103.9
Corticomedial amygdala
nTPM: 137.3
2829 Male, age 80, left hemisphere 158.9
2428 Male, age 75, right hemisphere 140.7
2240 Male, age 76, both hemispheres 135.9
2429 Female, age 94, left hemisphere 131.5
2242 Female, age 91, right hemisphere 131.0
2535 Female, age 67, right hemisphere 125.7
Lateral amygdala
nTPM: 131.0
2534 Female, age 94, left hemisphere 145.2
2256 Male, age 80, left hemisphere 144.2
1883 Male, age 76, both hemispheres 136.2
2516 Male, age 75, right hemisphere 136.2
2255 Female, age 91, right hemisphere 119.2
2830 Female, age 67, right hemisphere 104.9
Stria terminalis, bed nucleus
nTPM: 128.0
1974 Female, age 91, both hemispheres 144.4
2486 Female, age 94, both hemispheres 134.4
2201 Male, age 74, unknown 105.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 104.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 104.0
Samples: 152

Max nTPM: 187.6
Min nTPM: 19.2
Std nTPM: 29.4
Median nTPM: 103.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 187.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 183.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 156.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 151.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 150.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 148.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 148.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 147.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 144.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 144.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 143.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 143.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 141.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 141.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 140.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 138.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 138.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 137.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 136.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 135.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 135.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 135.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 134.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 134.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 134.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 132.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 132.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 131.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 131.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 130.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 128.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 128.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 128.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 127.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 127.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 126.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 126.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 126.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 125.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 124.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 124.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 124.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 123.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 122.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 121.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 120.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 120.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 117.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 117.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 117.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 117.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 116.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 116.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 115.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 115.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 114.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 112.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 112.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 112.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 112.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 110.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 110.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 109.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 109.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 109.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 108.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 108.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 107.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 107.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 107.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 105.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 103.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 102.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 102.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 102.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 102.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 101.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 100.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 100.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 100.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 100.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 100.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 100.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 97.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 97.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 96.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 96.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 96.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 95.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 95.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 95.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 94.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 93.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 92.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 92.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 92.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 92.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 91.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 91.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 89.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 89.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 88.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 87.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 86.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 86.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 85.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 84.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 84.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 83.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 82.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 79.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 77.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 76.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 76.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 74.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 74.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 74.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 73.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 73.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 72.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 68.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 68.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 65.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 61.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 60.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 59.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 57.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 57.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 57.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 56.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 54.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 53.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 52.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 50.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 50.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 49.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 39.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 33.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 19.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 257.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 257.2
FF:10151-102I7 76 years, female 257.2

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