BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:13.5 nTPM
FANTOM5:20.0 Scaled Tags Per Million
Pig:1.6 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.4
2481 Female, age 94, left hemisphere 18.8
1857 Female, age 85, left hemisphere 16.8
2290 Female, age 72, unknown 16.4
2289 Male, age 61, right hemisphere 16.2
1854 Male, age 80, left hemisphere 15.2
2288 Male, age 75, left hemisphere 14.7
2846 Female, age 79, unknown 13.2
1781 Male, age 74, unknown 11.8
Claustrum
nTPM: 10.9
2196 Female, age 79, unknown 12.2
2645 Female, age 72, unknown 11.6
2392 Female, age 94, both hemispheres 11.1
2491 Male, age 75, both hemispheres 10.9
2198 Male, age 80, both hemispheres 10.8
2568 Male, age 61, both hemispheres 10.6
1956 Male, age 74, unknown 10.5
2284 Female, age 91, both hemispheres 10.2
2292 Female, age 85, both hemispheres 10.0
Globus pallidus, externus
nTPM: 16.1
1996 Male, age 80, right hemisphere 21.2
2646 Male, age 61, right hemisphere 18.3
2772 Female, age 79, unknown 15.7
2395 Male, age 75, both hemispheres 12.8
2567 Female, age 72, unknown 12.7
Globus pallidus, internus
nTPM: 16.1
2037 Male, age 80, right hemisphere 19.7
1818 Male, age 74, unknown 19.0
2483 Female, age 94, right hemisphere 18.2
2778 Female, age 91, both hemispheres 15.3
2287 Male, age 75, right hemisphere 14.6
2111 Female, age 85, right hemisphere 13.7
2566 Female, age 72, unknown 12.5
Nucleus accumbens
nTPM: 14.7
2732 Male, age 80, right hemisphere 17.5
2286 Male, age 75, left hemisphere 16.7
1806 Female, age 85, left hemisphere 14.8
2698 Female, age 72, unknown 14.8
2824 Male, age 61, right hemisphere 13.9
1856 Female, age 91, right hemisphere 13.6
2391 Female, age 94, left hemisphere 13.6
1783 Male, age 74, unknown 12.3
Nucleus basalis of Meynert
nTPM: 14.7
2569 Male, age 61, both hemispheres 19.0
2393 Male, age 80, right hemisphere 14.3
2484 Female, age 94, left hemisphere 13.2
2821 Male, age 75, both hemispheres 12.2
Nucleus of the diagonal band
nTPM: 13.5
1979 Male, age 74, unknown 16.7
1812 Female, age 91, both hemispheres 13.4
2775 Male, age 80, right hemisphere 13.1
2195 Female, age 85, both hemispheres 12.9
2029 Male, age 61, right hemisphere 11.6
Olfactory tubercle
nTPM: 12.5
1846 Male, age 80, right hemisphere 13.9
2856 Male, age 75, right hemisphere 13.6
2487 Female, age 94, left hemisphere 12.3
1998 Female, age 91, both hemispheres 10.3
Putamen
nTPM: 13.5
2482 Female, age 94, left hemisphere 15.6
1937 Female, age 91, right hemisphere 14.1
1838 Male, age 80, right hemisphere 13.8
2489 Female, age 72, unknown 13.5
1829 Male, age 74, unknown 13.2
2466 Female, age 79, unknown 12.3
2647 Male, age 75, left hemisphere 12.3
Septal nuclei
nTPM: 14.6
2199 Male, age 80, right hemisphere 20.3
2629 Female, age 94, right hemisphere 15.1
2059 Female, age 85, both hemispheres 14.9
2009 Female, age 91, both hemispheres 14.5
2394 Male, age 61, left hemisphere 13.3
2031 Female, age 72, unknown 12.4
1960 Male, age 74, unknown 11.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.5
Samples: 246

Max nTPM: 48.6
Min nTPM: 1.7
Std nTPM: 7.0
Median nTPM: 12.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 48.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 44.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 39.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 35.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 35.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 35.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 33.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 29.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 28.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 28.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 28.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.6
Samples: 246

Max nTPM: 36.4
Min nTPM: 2.0
Std nTPM: 5.8
Median nTPM: 10.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 36.4
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 32.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 31.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 30.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 29.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 28.6
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 28.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 27.7
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 26.8
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 25.7
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 24.9
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Brain - Putamen (basal ganglia)
Average nTPM: 9.3
Samples: 205

Max nTPM: 20.8
Min nTPM: 0.8
Std nTPM: 3.8
Median nTPM: 9.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 20.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 19.5
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 19.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 19.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 19.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 18.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 18.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 17.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 16.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 16.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 16.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.0
FF:10164-103B2 76 years, female 20.0
Globus pallidus
Scaled Tags Per Million: 11.2
FF:10161-103A8 76 years, female 11.3
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 11.9
FF:10037-101F1 23-56 years, mixed 11.9
Putamen
Scaled Tags Per Million: 17.7
FF:10176-103C5 60 years, female 17.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.6
Pig sample Sample description nTPM
Caudate
nTPM: 1.6
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.8
Sample A Female 1.8
Sample B Female 1.4
Sample C Male 0.8
Sample D Male 2.3
Putamen
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.6
Sample A Female 1.3
Sample B Female 1.3
Sample C Male 0.6
Sample D Male 0.8
Septum
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.6
Sample A Female 0.9
Sample B Female 1.1
Sample C Male 0.6
Sample D Male 1.1
Ventral pallidum
nTPM: 1.4
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.7
Sample A Female 2.0
Sample B Female 1.3
Sample C Male 0.7
Sample D Male 1.4

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The Human Protein Atlas

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