MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA:21.5 nTPM
GTEx:22.6 nTPM
FANTOM5:56.4 Scaled Tags Per Million
Mouse:16.0 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.5
2219 Male, age 76, both hemispheres 23.9
2586 Male, age 75, left hemisphere 22.3
1830 Male, age 51, unknown 21.8
2828 Female, age 72, unknown 21.0
1870 Female, age 42, unknown 20.0
1833 Male, age 53, unknown 19.6
2666 Male, age 74, left hemisphere 19.5
1827 Male, age 72, unknown 19.4
2411 Female, age 72, unknown 19.2
2019 Male, age 18, unknown 18.5
Dorsal raphe nucleus
nTPM: 18.9
2750 Male, age 76, both hemispheres 20.2
2047 Male, age 72, unknown 19.0
2016 Female, age 72, unknown 18.7
1828 Male, age 53, unknown 18.5
2298 Female, age 72, unknown 18.2
Inferior colliculus
nTPM: 18.8
2849 Male, age 72, unknown 19.9
1890 Male, age 53, unknown 19.7
1848 Female, age 42, unknown 18.4
2097 Female, age 72, unknown 17.4
Median raphe nucleus
nTPM: 19.4
2220 Male, age 76, midline 19.4
Pedunculopontine tegmental nucleus
nTPM: 20.0
2338 Male, age 61, both hemispheres 21.3
1921 Female, age 85, both hemispheres 20.3
2334 Male, age 80, both hemispheres 18.5
Periaquaductal grey, anterior
nTPM: 20.3
1947 Male, age 18, unknown 21.4
1795 Male, age 51, unknown 20.5
2502 Female, age 75, unknown 19.1
Periaquaductal grey, dorsal
nTPM: 19.2
2464 Female, age 72, unknown 20.2
1831 Male, age 72, unknown 19.3
2850 Male, age 76, both hemispheres 19.2
1840 Male, age 53, unknown 18.2
Periaquaductal grey, lateral
nTPM: 21.5
2140 Male, age 76, both hemispheres 21.8
2053 Male, age 18, unknown 21.6
2272 Male, age 74, both hemispheres 21.0
Pretectal area
nTPM: 20.3
2316 Male, age 76, right hemisphere 23.7
2667 Female, age 75, unknown 23.4
2407 Male, age 75, both hemispheres 22.9
2273 Male, age 74, both hemispheres 20.6
2224 Female, age 72, unknown 19.8
2825 Male, age 18, unknown 19.6
1815 Male, age 53, unknown 19.2
1944 Female, age 72, unknown 19.2
2007 Male, age 72, unknown 19.0
1817 Female, age 42, unknown 18.0
1816 Male, age 51, unknown 17.9
Red nucleus
nTPM: 21.4
2823 Male, age 76, right hemisphere 23.8
2588 Male, age 74, left hemisphere 22.7
2227 Male, age 72, unknown 22.5
2769 Male, age 72, unknown 22.4
2785 Male, age 18, unknown 22.0
1904 Male, age 53, unknown 21.7
2584 Male, age 75, left hemisphere 21.7
2503 Female, age 72, unknown 21.6
1865 Male, age 51, unknown 21.1
1954 Female, age 42, unknown 19.8
2725 Female, age 75, unknown 19.6
1821 Female, age 72, unknown 17.4
Substantia nigra
nTPM: 19.1
2583 Male, age 75, right hemisphere 21.7
2590 Female, age 75, unknown 21.0
2699 Male, age 18, unknown 20.0
1941 Male, age 53, unknown 19.6
2409 Female, age 72, unknown 19.5
2665 Male, age 74, both hemispheres 19.3
1851 Male, age 51, unknown 18.6
1889 Female, age 72, unknown 17.4
2241 Male, age 72, unknown 17.2
1916 Female, age 42, unknown 16.9
Superior colliculus
nTPM: 20.8
1913 Female, age 42, unknown 23.9
1995 Male, age 72, unknown 21.7
1796 Male, age 53, unknown 21.2
1839 Male, age 51, unknown 21.0
2261 Male, age 18, unknown 20.5
2087 Female, age 72, unknown 20.4
2587 Male, age 74, left hemisphere 20.2
2664 Male, age 75, both hemispheres 20.2
1895 Male, age 76, right hemisphere 20.1
2668 Female, age 75, unknown 18.7
Ventral tegmental area
nTPM: 19.1
1942 Male, age 51, unknown 20.5
2021 Male, age 53, unknown 20.0
2218 Male, age 76, both hemispheres 19.5
2410 Female, age 72, unknown 18.8
2223 Female, age 72, unknown 18.5
1915 Female, age 42, unknown 17.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 139

Max nTPM: 47.9
Min nTPM: 11.9
Std nTPM: 6.4
Median nTPM: 21.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 47.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 44.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 42.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 38.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 36.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 35.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 34.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 33.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 33.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 33.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.4
FF:10158-103A5 76 years, female 56.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.6
Sample A Male 16.6
Sample B Male 17.6
Sample C Female 15.3
Sample D Female 14.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68341579 Antisense, RP_041207_01_G09, Mouse strain C57BL/6J (56 days, male) 2.7

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