BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:58.2 nTPM
HPA:58.2 nTPM
GTEx:56.2 nTPM
FANTOM5:46.2 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:144.6 nTPM
Allen mouse:12.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045951
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.9
2288 Male, age 75, left hemisphere 58.2
2846 Female, age 79, unknown 57.3
2290 Female, age 72, unknown 56.2
1781 Male, age 74, unknown 56.1
1854 Male, age 80, left hemisphere 55.7
1857 Female, age 85, left hemisphere 55.6
2481 Female, age 94, left hemisphere 51.8
2289 Male, age 61, right hemisphere 48.4
Claustrum
nTPM: 55.5
2198 Male, age 80, both hemispheres 59.8
2196 Female, age 79, unknown 56.5
2491 Male, age 75, both hemispheres 56.3
1956 Male, age 74, unknown 56.1
2568 Male, age 61, both hemispheres 56.1
2284 Female, age 91, both hemispheres 54.9
2645 Female, age 72, unknown 53.3
2392 Female, age 94, both hemispheres 53.2
2292 Female, age 85, both hemispheres 52.9
Globus pallidus, externus
nTPM: 54.3
2772 Female, age 79, unknown 59.6
1996 Male, age 80, right hemisphere 55.3
2395 Male, age 75, both hemispheres 55.0
2646 Male, age 61, right hemisphere 54.5
2567 Female, age 72, unknown 46.8
Globus pallidus, internus
nTPM: 55.9
2287 Male, age 75, right hemisphere 64.8
2778 Female, age 91, both hemispheres 60.6
1818 Male, age 74, unknown 55.9
2483 Female, age 94, right hemisphere 55.9
2037 Male, age 80, right hemisphere 54.0
2111 Female, age 85, right hemisphere 51.4
2566 Female, age 72, unknown 48.6
Nucleus accumbens
nTPM: 55.0
2286 Male, age 75, left hemisphere 60.1
1856 Female, age 91, right hemisphere 57.9
1806 Female, age 85, left hemisphere 57.4
1783 Male, age 74, unknown 56.9
2698 Female, age 72, unknown 56.2
2391 Female, age 94, left hemisphere 51.7
2732 Male, age 80, right hemisphere 50.3
2824 Male, age 61, right hemisphere 49.8
Nucleus basalis of Meynert
nTPM: 52.6
2821 Male, age 75, both hemispheres 54.0
2569 Male, age 61, both hemispheres 53.7
2484 Female, age 94, left hemisphere 52.7
2393 Male, age 80, right hemisphere 50.0
Nucleus of the diagonal band
nTPM: 58.2
2775 Male, age 80, right hemisphere 61.4
1812 Female, age 91, both hemispheres 60.9
2195 Female, age 85, both hemispheres 59.6
2029 Male, age 61, right hemisphere 55.7
1979 Male, age 74, unknown 53.1
Olfactory tubercle
nTPM: 57.2
1998 Female, age 91, both hemispheres 58.8
1846 Male, age 80, right hemisphere 58.5
2487 Female, age 94, left hemisphere 56.0
2856 Male, age 75, right hemisphere 55.3
Putamen
nTPM: 54.1
2466 Female, age 79, unknown 57.5
1937 Female, age 91, right hemisphere 55.6
2647 Male, age 75, left hemisphere 55.6
2482 Female, age 94, left hemisphere 53.8
1838 Male, age 80, right hemisphere 53.5
1829 Male, age 74, unknown 53.1
2489 Female, age 72, unknown 49.8
Septal nuclei
nTPM: 55.6
1960 Male, age 74, unknown 62.1
2031 Female, age 72, unknown 60.4
2009 Female, age 91, both hemispheres 55.8
2629 Female, age 94, right hemisphere 55.8
2059 Female, age 85, both hemispheres 54.3
2199 Male, age 80, right hemisphere 51.6
2394 Male, age 61, left hemisphere 49.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 54.2
Samples: 246

Max nTPM: 117.0
Min nTPM: 18.7
Std nTPM: 15.3
Median nTPM: 54.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 117.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 105.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 104.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 103.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 93.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 89.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 85.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 84.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 82.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 82.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 82.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.2
Samples: 246

Max nTPM: 98.3
Min nTPM: 14.9
Std nTPM: 15.5
Median nTPM: 57.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 98.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 93.4
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 85.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 85.3
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 85.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 83.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 80.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 80.2
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 78.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 77.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 77.5
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Brain - Putamen (basal ganglia)
Average nTPM: 52.6
Samples: 205

Max nTPM: 91.7
Min nTPM: 17.5
Std nTPM: 14.1
Median nTPM: 53.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 91.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 91.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 81.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 80.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 79.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 78.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 77.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 77.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 76.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 76.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 76.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.2
FF:10164-103B2 76 years, female 41.2
Globus pallidus
Scaled Tags Per Million: 23.4
FF:10161-103A8 76 years, female 27.1
FF:10175-103C4 60 years, female 19.7
Nucleus accumbens
Scaled Tags Per Million: 46.2
FF:10037-101F1 23-56 years, mixed 46.2
Putamen
Scaled Tags Per Million: 39.8
FF:10176-103C5 60 years, female 39.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Caudate
nTPM: 25.4
Samples: 4

Max nTPM: 31.1
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 26.9
Sample C Male 31.1
Sample D Male 22.5
Putamen
nTPM: 28.4
Samples: 4

Max nTPM: 37.3
Min nTPM: 22.6
Sample A Female 25.4
Sample B Female 22.6
Sample C Male 37.3
Sample D Male 28.2
Septum
nTPM: 24.6
Samples: 4

Max nTPM: 25.7
Min nTPM: 23.3
Sample A Female 25.3
Sample B Female 23.3
Sample C Male 25.7
Sample D Male 23.9
Ventral pallidum
nTPM: 23.9
Samples: 4

Max nTPM: 26.5
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 26.5
Sample C Male 24.9
Sample D Male 22.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 144.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 134.2
Samples: 4

Max nTPM: 139.2
Min nTPM: 122.3
Sample A Male 122.3
Sample B Male 136.6
Sample C Female 138.7
Sample D Female 139.2
Septum
nTPM: 131.4
Samples: 4

Max nTPM: 144.6
Min nTPM: 121.0
Sample A Male 123.6
Sample B Male 144.6
Sample C Female 136.3
Sample D Female 121.0
Ventral forebrain
nTPM: 144.6
Samples: 4

Max nTPM: 150.2
Min nTPM: 141.2
Sample A Male 141.2
Sample B Male 142.5
Sample C Female 150.2
Sample D Female 144.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.9
67767438 Antisense, RP_040916_01_G08, Mouse strain C57BL/6J (56 days, male) 11.9
Pallidum
Expression energy: 12.6
67767438 Antisense, RP_040916_01_G08, Mouse strain C57BL/6J (56 days, male) 12.6

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