MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:57.3 nTPM
HPA:57.3 nTPM
GTEx:49.5 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:126.3 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.4
1827 Male, age 72, unknown 56.6
2019 Male, age 18, unknown 56.4
2666 Male, age 74, left hemisphere 55.2
2586 Male, age 75, left hemisphere 54.7
2828 Female, age 72, unknown 53.7
1870 Female, age 42, unknown 52.4
2219 Male, age 76, both hemispheres 51.9
2411 Female, age 72, unknown 51.5
1833 Male, age 53, unknown 51.4
1830 Male, age 51, unknown 50.5
Dorsal raphe nucleus
nTPM: 52.1
2298 Female, age 72, unknown 56.6
1828 Male, age 53, unknown 52.4
2750 Male, age 76, both hemispheres 51.2
2047 Male, age 72, unknown 51.0
2016 Female, age 72, unknown 49.1
Inferior colliculus
nTPM: 54.1
2097 Female, age 72, unknown 56.1
1848 Female, age 42, unknown 53.7
1890 Male, age 53, unknown 53.3
2849 Male, age 72, unknown 53.2
Median raphe nucleus
nTPM: 52.9
2220 Male, age 76, midline 52.9
Pedunculopontine tegmental nucleus
nTPM: 52.8
1921 Female, age 85, both hemispheres 53.4
2334 Male, age 80, both hemispheres 52.8
2338 Male, age 61, both hemispheres 52.1
Periaquaductal grey, anterior
nTPM: 54.6
1795 Male, age 51, unknown 56.4
1947 Male, age 18, unknown 54.8
2502 Female, age 75, unknown 52.6
Periaquaductal grey, dorsal
nTPM: 51.2
1840 Male, age 53, unknown 51.9
2850 Male, age 76, both hemispheres 51.8
1831 Male, age 72, unknown 51.7
2464 Female, age 72, unknown 49.6
Periaquaductal grey, lateral
nTPM: 52.3
2272 Male, age 74, both hemispheres 54.1
2053 Male, age 18, unknown 52.1
2140 Male, age 76, both hemispheres 50.5
Pretectal area
nTPM: 57.3
1817 Female, age 42, unknown 62.3
1816 Male, age 51, unknown 62.0
1944 Female, age 72, unknown 61.7
2007 Male, age 72, unknown 60.9
1815 Male, age 53, unknown 59.7
2667 Female, age 75, unknown 59.5
2273 Male, age 74, both hemispheres 56.5
2224 Female, age 72, unknown 54.3
2407 Male, age 75, both hemispheres 51.6
2825 Male, age 18, unknown 51.3
2316 Male, age 76, right hemisphere 50.1
Red nucleus
nTPM: 53.7
1821 Female, age 72, unknown 58.1
2785 Male, age 18, unknown 55.9
2725 Female, age 75, unknown 54.6
2769 Male, age 72, unknown 54.3
1865 Male, age 51, unknown 53.8
1904 Male, age 53, unknown 53.5
2227 Male, age 72, unknown 53.5
2503 Female, age 72, unknown 53.4
2823 Male, age 76, right hemisphere 53.3
1954 Female, age 42, unknown 52.8
2588 Male, age 74, left hemisphere 51.4
2584 Male, age 75, left hemisphere 50.3
Substantia nigra
nTPM: 54.8
1916 Female, age 42, unknown 61.3
1889 Female, age 72, unknown 59.0
1851 Male, age 51, unknown 58.0
1941 Male, age 53, unknown 55.6
2665 Male, age 74, both hemispheres 54.3
2583 Male, age 75, right hemisphere 52.9
2699 Male, age 18, unknown 52.3
2241 Male, age 72, unknown 51.9
2590 Female, age 75, unknown 51.8
2409 Female, age 72, unknown 51.4
Superior colliculus
nTPM: 54.5
1796 Male, age 53, unknown 57.7
2261 Male, age 18, unknown 57.4
2087 Female, age 72, unknown 56.9
2668 Female, age 75, unknown 56.2
2587 Male, age 74, left hemisphere 54.4
1895 Male, age 76, right hemisphere 53.9
2664 Male, age 75, both hemispheres 53.2
1913 Female, age 42, unknown 52.5
1995 Male, age 72, unknown 51.8
1839 Male, age 51, unknown 51.1
Ventral tegmental area
nTPM: 54.2
2218 Male, age 76, both hemispheres 57.3
2410 Female, age 72, unknown 57.3
1915 Female, age 42, unknown 57.2
2223 Female, age 72, unknown 52.0
1942 Male, age 51, unknown 51.7
2021 Male, age 53, unknown 49.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.5
Samples: 139

Max nTPM: 103.8
Min nTPM: 18.0
Std nTPM: 14.8
Median nTPM: 49.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 103.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 94.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 91.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 86.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 83.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 81.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 70.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 68.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 67.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 67.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.4
Pig sample Sample description nTPM
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 34.4
Min nTPM: 28.0
Sample A Female 33.8
Sample B Female 28.0
Sample C Male 34.4
Sample D Male 31.0
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 25.6
Min nTPM: 22.7
Sample B Female 24.0
Sample C Male 25.6
Sample D Male 22.7
Substantia nigra
nTPM: 27.2
Samples: 4

Max nTPM: 36.1
Min nTPM: 22.8
Sample A Female 36.1
Sample B Female 23.0
Sample C Male 26.8
Sample D Male 22.8
Superior colliculi
nTPM: 34.5
Samples: 4

Max nTPM: 41.0
Min nTPM: 28.5
Sample A Female 41.0
Sample B Female 28.5
Sample C Male 37.0
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 126.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.3
Samples: 4

Max nTPM: 133.8
Min nTPM: 116.4
Sample A Male 133.8
Sample B Male 125.4
Sample C Female 116.4
Sample D Female 129.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
67767438 Antisense, RP_040916_01_G08, Mouse strain C57BL/6J (56 days, male) 10.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.