BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:89.8 nTPM
HPA:89.8 nTPM
GTEx:57.9 nTPM
FANTOM5:26.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA047089Antibody HPA053624
Glial cells Not detectedMedium
Neuronal cells LowMedium

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 89.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 79.6
2289 Male, age 61, right hemisphere 83.5
2846 Female, age 79, unknown 81.9
1857 Female, age 85, left hemisphere 80.3
1781 Male, age 74, unknown 79.8
2288 Male, age 75, left hemisphere 78.9
1854 Male, age 80, left hemisphere 78.8
2290 Female, age 72, unknown 78.3
2481 Female, age 94, left hemisphere 75.7
Claustrum
nTPM: 79.0
2568 Male, age 61, both hemispheres 82.6
2645 Female, age 72, unknown 82.0
2292 Female, age 85, both hemispheres 80.9
2284 Female, age 91, both hemispheres 79.2
2196 Female, age 79, unknown 78.9
2198 Male, age 80, both hemispheres 77.9
2491 Male, age 75, both hemispheres 77.6
1956 Male, age 74, unknown 76.5
2392 Female, age 94, both hemispheres 75.4
Globus pallidus, externus
nTPM: 80.0
2646 Male, age 61, right hemisphere 86.8
2567 Female, age 72, unknown 82.3
2772 Female, age 79, unknown 77.7
2395 Male, age 75, both hemispheres 77.4
1996 Male, age 80, right hemisphere 75.6
Globus pallidus, internus
nTPM: 77.8
2566 Female, age 72, unknown 79.6
2778 Female, age 91, both hemispheres 78.6
1818 Male, age 74, unknown 77.7
2483 Female, age 94, right hemisphere 77.7
2111 Female, age 85, right hemisphere 77.6
2287 Male, age 75, right hemisphere 76.8
2037 Male, age 80, right hemisphere 76.7
Nucleus accumbens
nTPM: 77.7
1783 Male, age 74, unknown 79.4
1806 Female, age 85, left hemisphere 79.3
1856 Female, age 91, right hemisphere 78.1
2732 Male, age 80, right hemisphere 77.7
2824 Male, age 61, right hemisphere 77.1
2698 Female, age 72, unknown 76.9
2286 Male, age 75, left hemisphere 76.8
2391 Female, age 94, left hemisphere 76.2
Nucleus basalis of Meynert
nTPM: 89.8
2821 Male, age 75, both hemispheres 113.4
2569 Male, age 61, both hemispheres 88.7
2484 Female, age 94, left hemisphere 78.5
2393 Male, age 80, right hemisphere 78.4
Nucleus of the diagonal band
nTPM: 78.8
1979 Male, age 74, unknown 84.2
2195 Female, age 85, both hemispheres 78.8
2029 Male, age 61, right hemisphere 77.4
1812 Female, age 91, both hemispheres 77.1
2775 Male, age 80, right hemisphere 76.8
Olfactory tubercle
nTPM: 77.6
1846 Male, age 80, right hemisphere 79.7
2856 Male, age 75, right hemisphere 79.4
2487 Female, age 94, left hemisphere 76.3
1998 Female, age 91, both hemispheres 75.1
Putamen
nTPM: 80.9
2647 Male, age 75, left hemisphere 87.2
2489 Female, age 72, unknown 85.1
1838 Male, age 80, right hemisphere 80.0
1829 Male, age 74, unknown 79.7
1937 Female, age 91, right hemisphere 78.3
2466 Female, age 79, unknown 78.3
2482 Female, age 94, left hemisphere 77.7
Septal nuclei
nTPM: 80.7
2199 Male, age 80, right hemisphere 88.0
2059 Female, age 85, both hemispheres 81.5
2394 Male, age 61, left hemisphere 81.1
2031 Female, age 72, unknown 79.3
1960 Male, age 74, unknown 79.0
2009 Female, age 91, both hemispheres 78.5
2629 Female, age 94, right hemisphere 77.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.1
Samples: 246

Max nTPM: 121.5
Min nTPM: 13.8
Std nTPM: 20.7
Median nTPM: 52.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 121.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 117.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 108.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 107.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 106.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 102.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 98.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 95.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 95.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 94.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 93.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.9
Samples: 246

Max nTPM: 259.7
Min nTPM: 12.0
Std nTPM: 27.9
Median nTPM: 42.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 259.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 144.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 140.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 140.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 134.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 129.3
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 109.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 104.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 104.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 103.8
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 103.1
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Brain - Putamen (basal ganglia)
Average nTPM: 57.9
Samples: 205

Max nTPM: 173.8
Min nTPM: 17.6
Std nTPM: 24.7
Median nTPM: 51.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 173.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 145.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 144.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 121.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 115.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 109.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 107.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 104.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 102.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 102.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 101.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.6
FF:10164-103B2 76 years, female 11.6
Globus pallidus
Scaled Tags Per Million: 12.2
FF:10161-103A8 76 years, female 19.6
FF:10175-103C4 60 years, female 4.7
Nucleus accumbens
Scaled Tags Per Million: 26.1
FF:10037-101F1 23-56 years, mixed 26.1
Putamen
Scaled Tags Per Million: 10.9
FF:10176-103C5 60 years, female 10.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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