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TPM2
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:78.6 nTPM
HPA:78.6 nTPM
GTEx:48.3 nTPM
FANTOM5:19.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 78.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 78.6
2816 Male, age 47, midline 81.9
2565 Male, age 75, midline 80.8
2194 Female, age 79, both hemispheres 77.4
2048 Male, age 55, midline 76.9
1981 Female, age 72, midline 76.1
Cervical spinal cord, dorsal horn
nTPM: 75.1
2721 Male, age 90, both hemispheres 80.0
1877 Male, age 55, unknown 76.0
2296 Male, age 66, both hemispheres 74.6
2297 Male, age 75, both hemispheres 74.0
2069 Male, age 47, both hemispheres 73.0
2173 Female, age 72, unknown 72.7
Cervical spinal cord, ventral horn
nTPM: 78.1
2098 Female, age 72, unknown 80.6
2809 Male, age 90, both hemispheres 78.9
2068 Male, age 55, unknown 77.6
2820 Female, age 79, both hemispheres 77.5
2295 Male, age 66, both hemispheres 77.4
2480 Male, age 75, both hemispheres 76.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 48.3
Samples: 159

Max nTPM: 221.7
Min nTPM: 9.7
Std nTPM: 35.7
Median nTPM: 40.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 221.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 220.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 200.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 183.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 178.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 160.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 143.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 125.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 114.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 99.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 89.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 86.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 83.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 80.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 77.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 76.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 73.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 73.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 67.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 67.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 65.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 65.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 64.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 64.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 62.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 61.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 61.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 61.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 60.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 60.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 59.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 58.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 58.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 57.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 57.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 57.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 55.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 55.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 53.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 53.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 51.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 51.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 51.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 50.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 50.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 49.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 49.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 49.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 49.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 48.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 48.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 48.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 47.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 47.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 47.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 47.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 47.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 46.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 46.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 46.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 46.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 46.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 46.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 45.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 45.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 44.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 44.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 43.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 43.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 43.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 42.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 41.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 41.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 41.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 40.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 40.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 40.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 40.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 40.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 39.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 38.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 38.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 38.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 37.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 37.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 37.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 37.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 36.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 36.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 35.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 35.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 35.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 35.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 34.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 34.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 34.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 33.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 33.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 32.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 32.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 32.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 32.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 32.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 32.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 32.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 31.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 31.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 31.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 30.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 30.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 30.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 30.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 29.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 29.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 29.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 29.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 29.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 29.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 28.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 28.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 27.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 27.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 27.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 27.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 27.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 27.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 26.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 26.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 26.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 25.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 24.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 24.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 23.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 23.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 23.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 23.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 22.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 22.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 21.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 21.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 19.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 19.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 19.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 19.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 19.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 18.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 18.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 18.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 17.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 16.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 16.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 16.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 15.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 14.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 14.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 11.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 9.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 19.6
FF:10181-103D1 60 years, female 24.6
FF:10159-103A6 76 years, female 14.6

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