MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.3 nTPM
HPA:33.3 nTPM
GTEx:47.4 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:5.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.0
2586 Male, age 75, left hemisphere 40.5
2666 Male, age 74, left hemisphere 40.0
2411 Female, age 72, unknown 33.3
1830 Male, age 51, unknown 29.4
1870 Female, age 42, unknown 29.1
1833 Male, age 53, unknown 29.0
2828 Female, age 72, unknown 27.3
1827 Male, age 72, unknown 25.0
2019 Male, age 18, unknown 23.8
2219 Male, age 76, both hemispheres 22.6
Dorsal raphe nucleus
nTPM: 30.5
2047 Male, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 32.6
1828 Male, age 53, unknown 30.0
2298 Female, age 72, unknown 28.8
2016 Female, age 72, unknown 28.4
Inferior colliculus
nTPM: 24.1
1890 Male, age 53, unknown 25.0
2097 Female, age 72, unknown 24.9
2849 Male, age 72, unknown 23.8
1848 Female, age 42, unknown 22.7
Median raphe nucleus
nTPM: 29.8
2220 Male, age 76, midline 29.8
Pedunculopontine tegmental nucleus
nTPM: 25.8
2334 Male, age 80, both hemispheres 29.3
2338 Male, age 61, both hemispheres 24.3
1921 Female, age 85, both hemispheres 23.9
Periaquaductal grey, anterior
nTPM: 29.8
1947 Male, age 18, unknown 31.6
1795 Male, age 51, unknown 29.2
2502 Female, age 75, unknown 28.5
Periaquaductal grey, dorsal
nTPM: 23.9
2464 Female, age 72, unknown 25.2
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 23.6
1840 Male, age 53, unknown 22.8
Periaquaductal grey, lateral
nTPM: 24.8
2053 Male, age 18, unknown 26.4
2140 Male, age 76, both hemispheres 25.7
2272 Male, age 74, both hemispheres 22.4
Pretectal area
nTPM: 24.8
2825 Male, age 18, unknown 30.0
1815 Male, age 53, unknown 29.0
2007 Male, age 72, unknown 27.2
2316 Male, age 76, right hemisphere 26.0
1816 Male, age 51, unknown 24.4
2224 Female, age 72, unknown 24.1
2407 Male, age 75, both hemispheres 23.8
1817 Female, age 42, unknown 23.5
1944 Female, age 72, unknown 22.8
2667 Female, age 75, unknown 21.6
2273 Male, age 74, both hemispheres 20.1
Red nucleus
nTPM: 33.3
2588 Male, age 74, left hemisphere 42.2
2584 Male, age 75, left hemisphere 37.7
2503 Female, age 72, unknown 35.9
2725 Female, age 75, unknown 34.3
2227 Male, age 72, unknown 33.5
1904 Male, age 53, unknown 33.3
2769 Male, age 72, unknown 33.2
1954 Female, age 42, unknown 31.8
2823 Male, age 76, right hemisphere 31.0
1865 Male, age 51, unknown 29.9
2785 Male, age 18, unknown 29.1
1821 Female, age 72, unknown 27.4
Substantia nigra
nTPM: 26.1
2665 Male, age 74, both hemispheres 30.6
2583 Male, age 75, right hemisphere 29.0
2590 Female, age 75, unknown 28.3
1851 Male, age 51, unknown 27.2
1889 Female, age 72, unknown 26.3
1916 Female, age 42, unknown 25.7
2699 Male, age 18, unknown 25.6
2241 Male, age 72, unknown 23.7
2409 Female, age 72, unknown 22.5
1941 Male, age 53, unknown 22.3
Superior colliculus
nTPM: 26.7
1913 Female, age 42, unknown 29.3
1995 Male, age 72, unknown 28.1
2668 Female, age 75, unknown 28.1
2587 Male, age 74, left hemisphere 27.5
2664 Male, age 75, both hemispheres 27.0
2261 Male, age 18, unknown 26.9
1796 Male, age 53, unknown 26.8
1839 Male, age 51, unknown 26.8
2087 Female, age 72, unknown 23.9
1895 Male, age 76, right hemisphere 22.7
Ventral tegmental area
nTPM: 27.9
1942 Male, age 51, unknown 29.5
2223 Female, age 72, unknown 29.4
2021 Male, age 53, unknown 28.1
2410 Female, age 72, unknown 27.9
1915 Female, age 42, unknown 26.8
2218 Male, age 76, both hemispheres 26.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.4
Samples: 139

Max nTPM: 140.7
Min nTPM: 10.6
Std nTPM: 24.5
Median nTPM: 42.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 140.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 139.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 122.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 113.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 108.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 96.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 96.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 92.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 87.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 84.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 10.8
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 9.0
Sample C Male 9.0
Sample D Male 10.8
Periaqueductal gray
nTPM: 7.2
Samples: 3

Max nTPM: 7.8
Min nTPM: 6.3
Sample B Female 7.8
Sample C Male 7.6
Sample D Male 6.3
Substantia nigra
nTPM: 8.4
Samples: 4

Max nTPM: 9.7
Min nTPM: 6.7
Sample A Female 9.7
Sample B Female 9.4
Sample C Male 6.7
Sample D Male 7.7
Superior colliculi
nTPM: 8.5
Samples: 4

Max nTPM: 10.1
Min nTPM: 6.9
Sample A Female 9.8
Sample B Female 10.1
Sample C Male 7.0
Sample D Male 6.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.0
Sample A Male 6.9
Sample B Male 5.6
Sample C Female 5.0
Sample D Female 6.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
79544896 Antisense, RP_071018_01_D02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.