BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.6 nTPM
HPA:3.6 nTPM
GTEx:17.5 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:11.0 nTPM

CAUDATE - Antibody stainingi
Antibody HPA002561
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.1
2288 Male, age 75, left hemisphere 3.7
2846 Female, age 79, unknown 3.5
1857 Female, age 85, left hemisphere 3.3
1854 Male, age 80, left hemisphere 3.2
2290 Female, age 72, unknown 3.2
2481 Female, age 94, left hemisphere 3.0
2289 Male, age 61, right hemisphere 2.7
1781 Male, age 74, unknown 2.5
Claustrum
nTPM: 3.1
2196 Female, age 79, unknown 3.5
1956 Male, age 74, unknown 3.2
2284 Female, age 91, both hemispheres 3.2
2292 Female, age 85, both hemispheres 3.2
2392 Female, age 94, both hemispheres 3.2
2645 Female, age 72, unknown 3.2
2198 Male, age 80, both hemispheres 2.9
2491 Male, age 75, both hemispheres 2.6
2568 Male, age 61, both hemispheres 2.5
Globus pallidus, externus
nTPM: 3.5
2395 Male, age 75, both hemispheres 4.0
1996 Male, age 80, right hemisphere 3.8
2772 Female, age 79, unknown 3.5
2567 Female, age 72, unknown 3.2
2646 Male, age 61, right hemisphere 3.0
Globus pallidus, internus
nTPM: 3.6
2287 Male, age 75, right hemisphere 4.9
2037 Male, age 80, right hemisphere 4.3
1818 Male, age 74, unknown 3.3
2111 Female, age 85, right hemisphere 3.2
2566 Female, age 72, unknown 3.2
2778 Female, age 91, both hemispheres 3.2
2483 Female, age 94, right hemisphere 3.0
Nucleus accumbens
nTPM: 3.0
2286 Male, age 75, left hemisphere 3.6
1806 Female, age 85, left hemisphere 3.2
1856 Female, age 91, right hemisphere 3.2
2698 Female, age 72, unknown 3.2
2391 Female, age 94, left hemisphere 3.1
2732 Male, age 80, right hemisphere 2.8
2824 Male, age 61, right hemisphere 2.8
1783 Male, age 74, unknown 2.5
Nucleus basalis of Meynert
nTPM: 3.3
2821 Male, age 75, both hemispheres 4.1
2393 Male, age 80, right hemisphere 3.2
2484 Female, age 94, left hemisphere 3.0
2569 Male, age 61, both hemispheres 2.8
Nucleus of the diagonal band
nTPM: 3.1
1979 Male, age 74, unknown 3.5
1812 Female, age 91, both hemispheres 3.2
2195 Female, age 85, both hemispheres 3.2
2029 Male, age 61, right hemisphere 3.0
2775 Male, age 80, right hemisphere 2.9
Olfactory tubercle
nTPM: 3.0
1998 Female, age 91, both hemispheres 3.2
2487 Female, age 94, left hemisphere 3.0
2856 Male, age 75, right hemisphere 3.0
1846 Male, age 80, right hemisphere 2.9
Putamen
nTPM: 3.0
2466 Female, age 79, unknown 3.5
1937 Female, age 91, right hemisphere 3.3
2489 Female, age 72, unknown 3.2
1829 Male, age 74, unknown 3.1
2482 Female, age 94, left hemisphere 3.0
1838 Male, age 80, right hemisphere 2.6
2647 Male, age 75, left hemisphere 2.6
Septal nuclei
nTPM: 3.1
2009 Female, age 91, both hemispheres 3.2
2031 Female, age 72, unknown 3.2
2059 Female, age 85, both hemispheres 3.2
2199 Male, age 80, right hemisphere 3.1
2394 Male, age 61, left hemisphere 3.0
2629 Female, age 94, right hemisphere 3.0
1960 Male, age 74, unknown 2.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.1
Samples: 246

Max nTPM: 35.9
Min nTPM: 0.0
Std nTPM: 9.5
Median nTPM: 18.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 35.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 35.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 33.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 32.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 31.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 29.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 29.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 29.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 28.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 27.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 27.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.2
Samples: 246

Max nTPM: 53.0
Min nTPM: 0.0
Std nTPM: 11.6
Median nTPM: 20.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 53.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 52.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 49.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 44.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 40.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 36.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 35.0
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 33.5
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 33.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 31.9
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Brain - Putamen (basal ganglia)
Average nTPM: 17.5
Samples: 205

Max nTPM: 50.0
Min nTPM: 0.0
Std nTPM: 10.9
Median nTPM: 20.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 50.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 40.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 39.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 38.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 37.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 34.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 33.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 32.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 31.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 31.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 31.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 36.1
FF:10037-101F1 23-56 years, mixed 36.1
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Caudate
nTPM: 7.1
Samples: 4

Max nTPM: 14.8
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 14.8
Sample D Male 13.7
Putamen
nTPM: 11.1
Samples: 4

Max nTPM: 25.8
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 25.8
Sample D Male 18.5
Septum
nTPM: 9.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 18.6
Sample D Male 17.5
Ventral pallidum
nTPM: 7.6
Samples: 4

Max nTPM: 15.8
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 14.4
Sample D Male 15.8

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The Human Protein Atlas

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