MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.7 nTPM
HPA:81.7 nTPM
GTEx:89.1 nTPM
FANTOM5:69.5 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:22.7 nTPM
Allen mouse:9.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.2
2586 Male, age 75, left hemisphere 96.5
2828 Female, age 72, unknown 92.5
2666 Male, age 74, left hemisphere 82.4
1827 Male, age 72, unknown 76.0
2219 Male, age 76, both hemispheres 74.6
1833 Male, age 53, unknown 68.9
1870 Female, age 42, unknown 66.5
1830 Male, age 51, unknown 65.5
2411 Female, age 72, unknown 65.2
2019 Male, age 18, unknown 64.0
Dorsal raphe nucleus
nTPM: 65.7
2750 Male, age 76, both hemispheres 68.1
2016 Female, age 72, unknown 66.3
1828 Male, age 53, unknown 65.4
2298 Female, age 72, unknown 64.6
2047 Male, age 72, unknown 64.2
Inferior colliculus
nTPM: 72.2
2849 Male, age 72, unknown 74.7
2097 Female, age 72, unknown 72.7
1848 Female, age 42, unknown 71.1
1890 Male, age 53, unknown 70.4
Median raphe nucleus
nTPM: 72.1
2220 Male, age 76, midline 72.1
Pedunculopontine tegmental nucleus
nTPM: 61.4
2334 Male, age 80, both hemispheres 66.3
1921 Female, age 85, both hemispheres 62.7
2338 Male, age 61, both hemispheres 55.4
Periaquaductal grey, anterior
nTPM: 81.7
2502 Female, age 75, unknown 88.6
1795 Male, age 51, unknown 79.5
1947 Male, age 18, unknown 76.9
Periaquaductal grey, dorsal
nTPM: 67.0
2464 Female, age 72, unknown 71.0
1840 Male, age 53, unknown 69.0
1831 Male, age 72, unknown 67.1
2850 Male, age 76, both hemispheres 60.7
Periaquaductal grey, lateral
nTPM: 65.2
2053 Male, age 18, unknown 69.9
2272 Male, age 74, both hemispheres 63.0
2140 Male, age 76, both hemispheres 62.8
Pretectal area
nTPM: 71.4
1816 Male, age 51, unknown 83.9
1815 Male, age 53, unknown 80.2
1817 Female, age 42, unknown 77.5
1944 Female, age 72, unknown 75.1
2007 Male, age 72, unknown 74.0
2825 Male, age 18, unknown 70.1
2667 Female, age 75, unknown 69.2
2316 Male, age 76, right hemisphere 65.6
2407 Male, age 75, both hemispheres 65.6
2224 Female, age 72, unknown 64.3
2273 Male, age 74, both hemispheres 59.4
Red nucleus
nTPM: 70.6
2588 Male, age 74, left hemisphere 78.2
2584 Male, age 75, left hemisphere 78.0
2503 Female, age 72, unknown 76.8
2227 Male, age 72, unknown 75.5
2769 Male, age 72, unknown 73.9
2785 Male, age 18, unknown 71.6
1954 Female, age 42, unknown 69.7
1904 Male, age 53, unknown 68.5
1865 Male, age 51, unknown 65.5
2725 Female, age 75, unknown 63.4
2823 Male, age 76, right hemisphere 62.9
1821 Female, age 72, unknown 62.7
Substantia nigra
nTPM: 71.2
2665 Male, age 74, both hemispheres 83.9
1851 Male, age 51, unknown 76.2
1916 Female, age 42, unknown 75.8
2583 Male, age 75, right hemisphere 75.0
2699 Male, age 18, unknown 74.1
1889 Female, age 72, unknown 70.3
2590 Female, age 75, unknown 69.3
2409 Female, age 72, unknown 62.7
1941 Male, age 53, unknown 62.6
2241 Male, age 72, unknown 62.1
Superior colliculus
nTPM: 75.7
2664 Male, age 75, both hemispheres 89.0
1796 Male, age 53, unknown 84.9
2087 Female, age 72, unknown 81.8
2668 Female, age 75, unknown 80.9
2261 Male, age 18, unknown 80.8
1913 Female, age 42, unknown 70.3
1839 Male, age 51, unknown 70.0
1995 Male, age 72, unknown 69.7
2587 Male, age 74, left hemisphere 68.3
1895 Male, age 76, right hemisphere 60.8
Ventral tegmental area
nTPM: 70.9
1942 Male, age 51, unknown 74.5
2218 Male, age 76, both hemispheres 71.7
1915 Female, age 42, unknown 71.1
2410 Female, age 72, unknown 70.1
2021 Male, age 53, unknown 69.5
2223 Female, age 72, unknown 68.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 89.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.1
Samples: 139

Max nTPM: 174.7
Min nTPM: 44.1
Std nTPM: 23.2
Median nTPM: 86.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 174.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 141.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 141.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 140.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 138.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 133.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 132.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 131.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 131.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 125.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 124.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.5
FF:10158-103A5 76 years, female 69.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.6
Pig sample Sample description nTPM
Midbrain
nTPM: 45.6
Samples: 4

Max nTPM: 53.1
Min nTPM: 41.3
Sample A Female 53.1
Sample B Female 43.1
Sample C Male 44.9
Sample D Male 41.3
Periaqueductal gray
nTPM: 35.6
Samples: 3

Max nTPM: 39.9
Min nTPM: 33.4
Sample B Female 39.9
Sample C Male 33.4
Sample D Male 33.5
Substantia nigra
nTPM: 43.6
Samples: 4

Max nTPM: 54.0
Min nTPM: 32.6
Sample A Female 44.1
Sample B Female 32.6
Sample C Male 43.5
Sample D Male 54.0
Superior colliculi
nTPM: 42.4
Samples: 4

Max nTPM: 50.9
Min nTPM: 27.5
Sample A Female 45.7
Sample B Female 27.5
Sample C Male 45.5
Sample D Male 50.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.5
Sample A Male 24.0
Sample B Male 20.5
Sample C Female 23.4
Sample D Female 23.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.9
2744 Antisense, RP_Baylor_103341, Mouse strain C57BL/6J (56 days, male) 9.9
2743 Antisense, RP_Baylor_103341, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.