MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.0 nTPM
HPA:59.0 nTPM
GTEx:72.6 nTPM
FANTOM5:97.9 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:23.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.2
1870 Female, age 42, unknown 60.6
2411 Female, age 72, unknown 60.2
1833 Male, age 53, unknown 58.3
1830 Male, age 51, unknown 58.2
2019 Male, age 18, unknown 57.7
2828 Female, age 72, unknown 55.7
1827 Male, age 72, unknown 53.8
2666 Male, age 74, left hemisphere 53.8
2219 Male, age 76, both hemispheres 52.7
2586 Male, age 75, left hemisphere 50.8
Dorsal raphe nucleus
nTPM: 56.2
2750 Male, age 76, both hemispheres 60.2
2016 Female, age 72, unknown 57.2
2298 Female, age 72, unknown 56.7
1828 Male, age 53, unknown 54.6
2047 Male, age 72, unknown 52.4
Inferior colliculus
nTPM: 54.8
2097 Female, age 72, unknown 56.0
1890 Male, age 53, unknown 55.3
1848 Female, age 42, unknown 55.2
2849 Male, age 72, unknown 52.7
Median raphe nucleus
nTPM: 53.9
2220 Male, age 76, midline 53.9
Pedunculopontine tegmental nucleus
nTPM: 56.9
2334 Male, age 80, both hemispheres 57.2
2338 Male, age 61, both hemispheres 57.0
1921 Female, age 85, both hemispheres 56.4
Periaquaductal grey, anterior
nTPM: 53.1
2502 Female, age 75, unknown 54.2
1947 Male, age 18, unknown 53.7
1795 Male, age 51, unknown 51.4
Periaquaductal grey, dorsal
nTPM: 54.2
2464 Female, age 72, unknown 56.6
1840 Male, age 53, unknown 53.6
2850 Male, age 76, both hemispheres 53.5
1831 Male, age 72, unknown 53.3
Periaquaductal grey, lateral
nTPM: 54.1
2140 Male, age 76, both hemispheres 54.2
2272 Male, age 74, both hemispheres 54.1
2053 Male, age 18, unknown 54.0
Pretectal area
nTPM: 54.9
2316 Male, age 76, right hemisphere 58.1
2667 Female, age 75, unknown 57.2
2273 Male, age 74, both hemispheres 57.0
1815 Male, age 53, unknown 56.4
2224 Female, age 72, unknown 56.1
1817 Female, age 42, unknown 55.2
2825 Male, age 18, unknown 54.0
2007 Male, age 72, unknown 53.5
1944 Female, age 72, unknown 53.1
2407 Male, age 75, both hemispheres 51.7
1816 Male, age 51, unknown 51.3
Red nucleus
nTPM: 59.0
1821 Female, age 72, unknown 65.3
1865 Male, age 51, unknown 62.0
1904 Male, age 53, unknown 61.8
1954 Female, age 42, unknown 61.7
2227 Male, age 72, unknown 60.9
2769 Male, age 72, unknown 60.5
2503 Female, age 72, unknown 60.0
2823 Male, age 76, right hemisphere 60.0
2785 Male, age 18, unknown 57.7
2725 Female, age 75, unknown 54.1
2588 Male, age 74, left hemisphere 52.5
2584 Male, age 75, left hemisphere 51.2
Substantia nigra
nTPM: 54.9
2409 Female, age 72, unknown 59.0
2241 Male, age 72, unknown 57.0
1851 Male, age 51, unknown 56.7
2699 Male, age 18, unknown 56.5
1889 Female, age 72, unknown 55.5
2590 Female, age 75, unknown 54.3
1941 Male, age 53, unknown 53.4
1916 Female, age 42, unknown 52.8
2583 Male, age 75, right hemisphere 52.7
2665 Male, age 74, both hemispheres 50.7
Superior colliculus
nTPM: 55.5
1913 Female, age 42, unknown 62.0
1995 Male, age 72, unknown 60.9
1895 Male, age 76, right hemisphere 57.4
1839 Male, age 51, unknown 55.6
2668 Female, age 75, unknown 55.4
2587 Male, age 74, left hemisphere 55.2
1796 Male, age 53, unknown 53.4
2087 Female, age 72, unknown 53.4
2261 Male, age 18, unknown 52.2
2664 Male, age 75, both hemispheres 49.3
Ventral tegmental area
nTPM: 56.2
2223 Female, age 72, unknown 59.7
2410 Female, age 72, unknown 59.0
1915 Female, age 42, unknown 55.3
1942 Male, age 51, unknown 54.9
2218 Male, age 76, both hemispheres 54.5
2021 Male, age 53, unknown 54.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.6
Samples: 139

Max nTPM: 170.9
Min nTPM: 31.1
Std nTPM: 24.0
Median nTPM: 66.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 170.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 148.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 139.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 137.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 133.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 128.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 120.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 120.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 119.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 112.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 112.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.9
FF:10158-103A5 76 years, female 97.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.3
Pig sample Sample description nTPM
Midbrain
nTPM: 54.3
Samples: 4

Max nTPM: 99.6
Min nTPM: 31.4
Sample A Female 99.6
Sample B Female 51.6
Sample C Male 31.4
Sample D Male 34.6
Periaqueductal gray
nTPM: 46.9
Samples: 3

Max nTPM: 49.5
Min nTPM: 42.9
Sample B Female 48.3
Sample C Male 42.9
Sample D Male 49.5
Substantia nigra
nTPM: 53.5
Samples: 4

Max nTPM: 75.1
Min nTPM: 41.2
Sample A Female 54.8
Sample B Female 43.0
Sample C Male 41.2
Sample D Male 75.1
Superior colliculi
nTPM: 47.3
Samples: 4

Max nTPM: 55.2
Min nTPM: 42.2
Sample A Female 55.2
Sample B Female 42.2
Sample C Male 43.5
Sample D Male 48.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 27.8
Min nTPM: 19.3
Sample A Male 27.8
Sample B Male 21.5
Sample C Female 19.3
Sample D Female 24.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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