BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA:31.2 nTPM
GTEx:10.1 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:18.8 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.2
2288 Male, age 75, left hemisphere 13.6
1781 Male, age 74, unknown 9.7
2846 Female, age 79, unknown 9.4
1854 Male, age 80, left hemisphere 8.8
2289 Male, age 61, right hemisphere 8.5
2290 Female, age 72, unknown 8.5
2481 Female, age 94, left hemisphere 8.2
1857 Female, age 85, left hemisphere 6.6
Claustrum
nTPM: 16.0
2292 Female, age 85, both hemispheres 22.9
1956 Male, age 74, unknown 22.0
2491 Male, age 75, both hemispheres 15.8
2196 Female, age 79, unknown 14.5
2198 Male, age 80, both hemispheres 14.4
2392 Female, age 94, both hemispheres 14.0
2284 Female, age 91, both hemispheres 13.8
2568 Male, age 61, both hemispheres 13.5
2645 Female, age 72, unknown 13.4
Globus pallidus, externus
nTPM: 29.3
2772 Female, age 79, unknown 35.2
1996 Male, age 80, right hemisphere 33.0
2567 Female, age 72, unknown 28.2
2646 Male, age 61, right hemisphere 25.3
2395 Male, age 75, both hemispheres 24.9
Globus pallidus, internus
nTPM: 31.2
2111 Female, age 85, right hemisphere 48.3
2778 Female, age 91, both hemispheres 41.5
2287 Male, age 75, right hemisphere 33.5
2566 Female, age 72, unknown 29.3
2037 Male, age 80, right hemisphere 27.1
1818 Male, age 74, unknown 26.9
2483 Female, age 94, right hemisphere 11.8
Nucleus accumbens
nTPM: 12.2
2732 Male, age 80, right hemisphere 16.6
2391 Female, age 94, left hemisphere 15.7
2698 Female, age 72, unknown 14.1
2286 Male, age 75, left hemisphere 12.7
1806 Female, age 85, left hemisphere 10.5
1783 Male, age 74, unknown 10.3
2824 Male, age 61, right hemisphere 10.1
1856 Female, age 91, right hemisphere 7.3
Nucleus basalis of Meynert
nTPM: 14.7
2569 Male, age 61, both hemispheres 21.7
2821 Male, age 75, both hemispheres 14.9
2484 Female, age 94, left hemisphere 11.1
2393 Male, age 80, right hemisphere 10.8
Nucleus of the diagonal band
nTPM: 7.9
1812 Female, age 91, both hemispheres 11.0
2029 Male, age 61, right hemisphere 8.9
1979 Male, age 74, unknown 7.4
2775 Male, age 80, right hemisphere 6.0
2195 Female, age 85, both hemispheres 5.9
Olfactory tubercle
nTPM: 7.9
1998 Female, age 91, both hemispheres 8.6
2487 Female, age 94, left hemisphere 8.0
2856 Male, age 75, right hemisphere 8.0
1846 Male, age 80, right hemisphere 7.2
Putamen
nTPM: 10.9
2647 Male, age 75, left hemisphere 13.9
1829 Male, age 74, unknown 13.7
2489 Female, age 72, unknown 11.6
1937 Female, age 91, right hemisphere 11.0
2466 Female, age 79, unknown 9.9
2482 Female, age 94, left hemisphere 9.8
1838 Male, age 80, right hemisphere 6.3
Septal nuclei
nTPM: 9.5
2394 Male, age 61, left hemisphere 16.0
2059 Female, age 85, both hemispheres 10.3
2199 Male, age 80, right hemisphere 9.6
2629 Female, age 94, right hemisphere 8.7
2031 Female, age 72, unknown 8.1
2009 Female, age 91, both hemispheres 7.7
1960 Male, age 74, unknown 6.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.2
Samples: 246

Max nTPM: 22.7
Min nTPM: 0.9
Std nTPM: 3.8
Median nTPM: 5.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 22.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 22.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 21.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 20.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 19.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 19.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 18.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 16.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 15.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 15.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 15.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.9
Samples: 246

Max nTPM: 33.2
Min nTPM: 0.8
Std nTPM: 4.2
Median nTPM: 3.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 33.2
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 24.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 23.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 20.4
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 20.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 20.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 18.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 18.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 18.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 17.1
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 13.9
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Brain - Putamen (basal ganglia)
Average nTPM: 10.1
Samples: 205

Max nTPM: 71.8
Min nTPM: 1.4
Std nTPM: 6.6
Median nTPM: 8.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 71.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 26.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 24.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 24.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 23.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 22.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 21.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 21.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 21.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 19.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 19.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.7
FF:10164-103B2 76 years, female 1.7
Globus pallidus
Scaled Tags Per Million: 14.1
FF:10161-103A8 76 years, female 17.3
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 8.8
FF:10037-101F1 23-56 years, mixed 8.8
Putamen
Scaled Tags Per Million: 4.8
FF:10176-103C5 60 years, female 4.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.9
Pig sample Sample description nTPM
Caudate
nTPM: 8.4
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.7
Sample A Female 8.7
Sample B Female 7.7
Sample C Male 8.5
Sample D Male 8.7
Putamen
nTPM: 29.9
Samples: 4

Max nTPM: 51.3
Min nTPM: 12.9
Sample A Female 51.3
Sample B Female 12.9
Sample C Male 18.4
Sample D Male 37.1
Septum
nTPM: 15.9
Samples: 4

Max nTPM: 21.4
Min nTPM: 10.6
Sample A Female 15.5
Sample B Female 10.6
Sample C Male 16.0
Sample D Male 21.4
Ventral pallidum
nTPM: 27.9
Samples: 4

Max nTPM: 42.1
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 20.5
Sample C Male 41.7
Sample D Male 42.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.8
Samples: 4

Max nTPM: 21.4
Min nTPM: 14.5
Sample A Male 18.0
Sample B Male 21.4
Sample C Female 17.3
Sample D Female 14.5
Septum
nTPM: 18.8
Samples: 4

Max nTPM: 26.4
Min nTPM: 10.3
Sample A Male 10.3
Sample B Male 15.9
Sample C Female 22.7
Sample D Female 26.4
Ventral forebrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.6
Sample A Male 11.4
Sample B Male 7.6
Sample C Female 11.4
Sample D Female 11.7

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The Human Protein Atlas

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