MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA:16.4 nTPM
GTEx:23.4 nTPM
FANTOM5:56.8 Scaled Tags Per Million
Pig:48.2 nTPM
Mouse:25.6 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
2666 Male, age 74, left hemisphere 19.1
2219 Male, age 76, both hemispheres 17.1
2586 Male, age 75, left hemisphere 15.9
2019 Male, age 18, unknown 15.8
2828 Female, age 72, unknown 15.5
1827 Male, age 72, unknown 15.4
2411 Female, age 72, unknown 15.0
1833 Male, age 53, unknown 12.1
1830 Male, age 51, unknown 11.0
1870 Female, age 42, unknown 9.8
Dorsal raphe nucleus
nTPM: 9.7
2750 Male, age 76, both hemispheres 13.3
2047 Male, age 72, unknown 11.6
2298 Female, age 72, unknown 11.0
1828 Male, age 53, unknown 8.6
2016 Female, age 72, unknown 3.8
Inferior colliculus
nTPM: 13.4
2097 Female, age 72, unknown 15.1
2849 Male, age 72, unknown 13.4
1848 Female, age 42, unknown 13.2
1890 Male, age 53, unknown 11.9
Median raphe nucleus
nTPM: 15.1
2220 Male, age 76, midline 15.1
Pedunculopontine tegmental nucleus
nTPM: 12.3
1921 Female, age 85, both hemispheres 18.2
2334 Male, age 80, both hemispheres 13.1
2338 Male, age 61, both hemispheres 5.6
Periaquaductal grey, anterior
nTPM: 16.4
2502 Female, age 75, unknown 19.5
1795 Male, age 51, unknown 15.0
1947 Male, age 18, unknown 14.8
Periaquaductal grey, dorsal
nTPM: 8.8
2464 Female, age 72, unknown 10.2
1831 Male, age 72, unknown 9.5
1840 Male, age 53, unknown 9.0
2850 Male, age 76, both hemispheres 6.4
Periaquaductal grey, lateral
nTPM: 7.7
2053 Male, age 18, unknown 9.7
2140 Male, age 76, both hemispheres 7.1
2272 Male, age 74, both hemispheres 6.4
Pretectal area
nTPM: 16.4
1816 Male, age 51, unknown 23.4
1817 Female, age 42, unknown 23.3
2007 Male, age 72, unknown 23.2
1815 Male, age 53, unknown 22.0
1944 Female, age 72, unknown 21.9
2667 Female, age 75, unknown 14.2
2407 Male, age 75, both hemispheres 13.8
2316 Male, age 76, right hemisphere 13.4
2825 Male, age 18, unknown 11.3
2224 Female, age 72, unknown 9.8
2273 Male, age 74, both hemispheres 3.7
Red nucleus
nTPM: 11.8
2785 Male, age 18, unknown 17.9
2584 Male, age 75, left hemisphere 17.5
2588 Male, age 74, left hemisphere 14.4
2823 Male, age 76, right hemisphere 12.6
1904 Male, age 53, unknown 11.5
1865 Male, age 51, unknown 10.8
2769 Male, age 72, unknown 10.6
1821 Female, age 72, unknown 10.4
2227 Male, age 72, unknown 10.4
1954 Female, age 42, unknown 9.5
2503 Female, age 72, unknown 8.3
2725 Female, age 75, unknown 7.8
Substantia nigra
nTPM: 12.8
1889 Female, age 72, unknown 18.7
1916 Female, age 42, unknown 17.2
2665 Male, age 74, both hemispheres 15.2
1851 Male, age 51, unknown 14.5
1941 Male, age 53, unknown 14.1
2583 Male, age 75, right hemisphere 13.2
2241 Male, age 72, unknown 10.1
2409 Female, age 72, unknown 9.4
2590 Female, age 75, unknown 8.3
2699 Male, age 18, unknown 7.2
Superior colliculus
nTPM: 15.9
2668 Female, age 75, unknown 25.2
2087 Female, age 72, unknown 20.4
2261 Male, age 18, unknown 18.3
1796 Male, age 53, unknown 18.1
1895 Male, age 76, right hemisphere 17.6
2664 Male, age 75, both hemispheres 13.8
1839 Male, age 51, unknown 12.6
1913 Female, age 42, unknown 12.6
1995 Male, age 72, unknown 10.5
2587 Male, age 74, left hemisphere 10.1
Ventral tegmental area
nTPM: 13.0
2410 Female, age 72, unknown 16.8
2218 Male, age 76, both hemispheres 16.6
1942 Male, age 51, unknown 13.2
1915 Female, age 42, unknown 12.4
2223 Female, age 72, unknown 10.4
2021 Male, age 53, unknown 8.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.4
Samples: 139

Max nTPM: 43.5
Min nTPM: 9.8
Std nTPM: 7.3
Median nTPM: 23.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 43.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 41.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 37.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 36.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 35.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 35.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 35.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 34.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 34.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.8
FF:10158-103A5 76 years, female 56.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.2
Pig sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 70.7
Min nTPM: 27.6
Sample A Female 40.3
Sample B Female 27.6
Sample C Male 70.7
Sample D Male 46.7
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 31.5
Min nTPM: 25.9
Sample B Female 25.9
Sample C Male 31.5
Sample D Male 26.3
Substantia nigra
nTPM: 37.1
Samples: 4

Max nTPM: 41.9
Min nTPM: 31.0
Sample A Female 39.2
Sample B Female 31.0
Sample C Male 41.9
Sample D Male 36.2
Superior colliculi
nTPM: 48.2
Samples: 4

Max nTPM: 61.8
Min nTPM: 39.1
Sample A Female 40.2
Sample B Female 39.1
Sample C Male 61.8
Sample D Male 51.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 29.1
Min nTPM: 22.9
Sample A Male 29.1
Sample B Male 22.9
Sample C Female 24.6
Sample D Female 25.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
69104579 Antisense, RP_050316_02_B05, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.