BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:0.4 nTPM
HPA:0.4 nTPM
GTEx:0.4 nTPM
FANTOM5:1.1 Scaled Tags Per Million
Pig:2.5 nTPM
Mouse:0.4 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA029902
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2289 Male, age 61, right hemisphere 0.5
1781 Male, age 74, unknown 0.3
1854 Male, age 80, left hemisphere 0.3
2288 Male, age 75, left hemisphere 0.2
2290 Female, age 72, unknown 0.1
2481 Female, age 94, left hemisphere 0.1
1857 Female, age 85, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.3
2645 Female, age 72, unknown 0.5
2568 Male, age 61, both hemispheres 0.4
2196 Female, age 79, unknown 0.3
2284 Female, age 91, both hemispheres 0.3
2292 Female, age 85, both hemispheres 0.3
1956 Male, age 74, unknown 0.2
2198 Male, age 80, both hemispheres 0.2
2491 Male, age 75, both hemispheres 0.2
2392 Female, age 94, both hemispheres 0.1
Globus pallidus, externus
nTPM: 0.4
2567 Female, age 72, unknown 0.8
2646 Male, age 61, right hemisphere 0.8
1996 Male, age 80, right hemisphere 0.2
2772 Female, age 79, unknown 0.2
2395 Male, age 75, both hemispheres 0.0
Globus pallidus, internus
nTPM: 0.3
2111 Female, age 85, right hemisphere 0.6
2566 Female, age 72, unknown 0.5
2778 Female, age 91, both hemispheres 0.4
2037 Male, age 80, right hemisphere 0.3
1818 Male, age 74, unknown 0.2
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.3
2732 Male, age 80, right hemisphere 0.4
1783 Male, age 74, unknown 0.3
2286 Male, age 75, left hemisphere 0.3
2824 Male, age 61, right hemisphere 0.3
1806 Female, age 85, left hemisphere 0.2
2391 Female, age 94, left hemisphere 0.2
1856 Female, age 91, right hemisphere 0.1
2698 Female, age 72, unknown 0.1
Nucleus basalis of Meynert
nTPM: 0.4
2569 Male, age 61, both hemispheres 0.7
2393 Male, age 80, right hemisphere 0.3
2484 Female, age 94, left hemisphere 0.3
2821 Male, age 75, both hemispheres 0.3
Nucleus of the diagonal band
nTPM: 0.1
2029 Male, age 61, right hemisphere 0.2
1979 Male, age 74, unknown 0.1
2195 Female, age 85, both hemispheres 0.1
2775 Male, age 80, right hemisphere 0.1
1812 Female, age 91, both hemispheres 0.0
Olfactory tubercle
nTPM: 0.2
1998 Female, age 91, both hemispheres 0.3
2856 Male, age 75, right hemisphere 0.2
2487 Female, age 94, left hemisphere 0.1
1846 Male, age 80, right hemisphere 0.0
Putamen
nTPM: 0.3
2489 Female, age 72, unknown 0.6
2647 Male, age 75, left hemisphere 0.6
1829 Male, age 74, unknown 0.3
1937 Female, age 91, right hemisphere 0.3
2466 Female, age 79, unknown 0.3
1838 Male, age 80, right hemisphere 0.2
2482 Female, age 94, left hemisphere 0.1
Septal nuclei
nTPM: 0.1
2059 Female, age 85, both hemispheres 0.3
2394 Male, age 61, left hemisphere 0.3
1960 Male, age 74, unknown 0.1
2009 Female, age 91, both hemispheres 0.1
2031 Female, age 72, unknown 0.1
2199 Male, age 80, right hemisphere 0.0
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.4
Samples: 246

Max nTPM: 1.3
Min nTPM: 0.1
Std nTPM: 0.1
Median nTPM: 0.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 0.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 0.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 0.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 0.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 0.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 0.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 0.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 0.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 0.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 0.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.4
Samples: 246

Max nTPM: 1.0
Min nTPM: 0.1
Std nTPM: 0.1
Median nTPM: 0.4
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 1.0
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 0.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 0.8
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 0.8
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 0.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 0.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 0.8
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 0.8
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 0.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 0.8
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 0.7
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Brain - Putamen (basal ganglia)
Average nTPM: 0.4
Samples: 205

Max nTPM: 0.9
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 0.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 0.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 0.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 0.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 0.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 0.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 0.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 0.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 0.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 0.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 0.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 0.4
FF:10161-103A8 76 years, female 0.9
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 1.1
FF:10037-101F1 23-56 years, mixed 1.1
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.5
Pig sample Sample description nTPM
Caudate
nTPM: 2.5
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 3.1
Sample C Male 2.3
Sample D Male 2.5
Putamen
nTPM: 2.2
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.7
Sample A Female 1.9
Sample B Female 2.6
Sample C Male 1.7
Sample D Male 2.4
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.8
Sample A Female 1.9
Sample B Female 2.3
Sample C Male 1.8
Sample D Male 2.4
Ventral pallidum
nTPM: 2.1
Samples: 4

Max nTPM: 2.2
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 2.1
Sample C Male 2.2
Sample D Male 2.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.4
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.6
Sample C Female 1.1
Sample D Female 0.0
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.2
Sample C Female 0.1
Sample D Female 0.1
Ventral forebrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.4
Sample C Female 0.0
Sample D Female 0.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69114567 Antisense, RP_050317_01_H02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69114567 Antisense, RP_050317_01_H02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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