MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:90689.2 nTPM
HPA:90689.2 nTPM
GTEx:78503.3 nTPM
Pig:7366.9 nTPM
Mouse:10219.7 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90689.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81924.6
2219 Male, age 76, both hemispheres 93525.5
2586 Male, age 75, left hemisphere 93277.2
2828 Female, age 72, unknown 87134.4
2666 Male, age 74, left hemisphere 86687.7
1833 Male, age 53, unknown 81063.0
1830 Male, age 51, unknown 79609.1
1870 Female, age 42, unknown 79278.0
1827 Male, age 72, unknown 74516.2
2019 Male, age 18, unknown 74112.0
2411 Female, age 72, unknown 70043.1
Dorsal raphe nucleus
nTPM: 73284.2
1828 Male, age 53, unknown 80338.0
2047 Male, age 72, unknown 75272.3
2750 Male, age 76, both hemispheres 73390.2
2016 Female, age 72, unknown 71574.8
2298 Female, age 72, unknown 65845.5
Inferior colliculus
nTPM: 78534.9
2849 Male, age 72, unknown 91780.0
1890 Male, age 53, unknown 78547.0
1848 Female, age 42, unknown 75744.5
2097 Female, age 72, unknown 68068.0
Median raphe nucleus
nTPM: 90689.2
2220 Male, age 76, midline 90689.2
Pedunculopontine tegmental nucleus
nTPM: 81181.8
2334 Male, age 80, both hemispheres 87383.6
2338 Male, age 61, both hemispheres 85053.1
1921 Female, age 85, both hemispheres 71108.7
Periaquaductal grey, anterior
nTPM: 72810.5
2502 Female, age 75, unknown 76090.4
1795 Male, age 51, unknown 71750.0
1947 Male, age 18, unknown 70591.1
Periaquaductal grey, dorsal
nTPM: 79297.1
2850 Male, age 76, both hemispheres 92552.0
1831 Male, age 72, unknown 77049.5
2464 Female, age 72, unknown 75542.9
1840 Male, age 53, unknown 72044.1
Periaquaductal grey, lateral
nTPM: 72295.4
2140 Male, age 76, both hemispheres 76150.6
2053 Male, age 18, unknown 72412.2
2272 Male, age 74, both hemispheres 68323.6
Pretectal area
nTPM: 78029.9
1816 Male, age 51, unknown 85511.8
1944 Female, age 72, unknown 85145.9
2667 Female, age 75, unknown 84510.8
1817 Female, age 42, unknown 84180.5
1815 Male, age 53, unknown 81341.7
2007 Male, age 72, unknown 79112.7
2825 Male, age 18, unknown 78779.2
2407 Male, age 75, both hemispheres 74649.7
2224 Female, age 72, unknown 69829.2
2316 Male, age 76, right hemisphere 67923.5
2273 Male, age 74, both hemispheres 67343.6
Red nucleus
nTPM: 80607.0
2503 Female, age 72, unknown 86695.3
2588 Male, age 74, left hemisphere 86351.9
2584 Male, age 75, left hemisphere 85046.2
1954 Female, age 42, unknown 82674.7
2823 Male, age 76, right hemisphere 82288.9
1865 Male, age 51, unknown 81774.5
2785 Male, age 18, unknown 79942.8
2227 Male, age 72, unknown 78682.1
2769 Male, age 72, unknown 77733.2
1904 Male, age 53, unknown 77474.8
2725 Female, age 75, unknown 75088.9
1821 Female, age 72, unknown 73530.8
Substantia nigra
nTPM: 80054.4
2699 Male, age 18, unknown 95805.8
2665 Male, age 74, both hemispheres 92396.8
1916 Female, age 42, unknown 85019.2
1941 Male, age 53, unknown 80531.9
1889 Female, age 72, unknown 78003.7
2583 Male, age 75, right hemisphere 76630.6
2241 Male, age 72, unknown 73867.7
2590 Female, age 75, unknown 73776.2
1851 Male, age 51, unknown 73121.8
2409 Female, age 72, unknown 71390.9
Superior colliculus
nTPM: 77390.0
2664 Male, age 75, both hemispheres 90731.5
2087 Female, age 72, unknown 79174.8
2587 Male, age 74, left hemisphere 78927.1
1913 Female, age 42, unknown 77301.7
2668 Female, age 75, unknown 75932.1
1839 Male, age 51, unknown 75818.1
1895 Male, age 76, right hemisphere 75545.4
1995 Male, age 72, unknown 74680.0
1796 Male, age 53, unknown 72918.8
2261 Male, age 18, unknown 72870.7
Ventral tegmental area
nTPM: 77737.6
2218 Male, age 76, both hemispheres 86416.8
2223 Female, age 72, unknown 81828.3
1942 Male, age 51, unknown 77241.3
1915 Female, age 42, unknown 75369.8
2021 Male, age 53, unknown 73832.7
2410 Female, age 72, unknown 71736.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78503.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78503.3
Samples: 139

Max nTPM: 288550.1
Min nTPM: 11012.7
Std nTPM: 55441.1
Median nTPM: 59944.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 288550.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 255929.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 222687.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 222062.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 221273.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 218813.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 203035.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 199575.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 177859.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 176577.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 176570.9
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MIDBRAIN - Pig RNA-seqi
Average nTPM 7366.9
Pig sample Sample description nTPM
Midbrain
nTPM: 7366.9
Samples: 4

Max nTPM: 10745.4
Min nTPM: 4310.8
Sample A Female 6165.6
Sample B Female 10745.4
Sample C Male 8245.8
Sample D Male 4310.8
Periaqueductal gray
nTPM: 5515.5
Samples: 3

Max nTPM: 6000.0
Min nTPM: 4547.7
Sample B Female 6000.0
Sample C Male 5998.8
Sample D Male 4547.7
Substantia nigra
nTPM: 6275.8
Samples: 4

Max nTPM: 7858.2
Min nTPM: 3796.1
Sample A Female 7491.9
Sample B Female 5956.8
Sample C Male 7858.2
Sample D Male 3796.1
Superior colliculi
nTPM: 5376.7
Samples: 4

Max nTPM: 7516.0
Min nTPM: 882.6
Sample A Female 6687.8
Sample B Female 882.6
Sample C Male 7516.0
Sample D Male 6420.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10219.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 10219.8
Samples: 4

Max nTPM: 10677.3
Min nTPM: 9760.7
Sample A Male 10677.3
Sample B Male 10048.6
Sample C Female 10392.4
Sample D Female 9760.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
77280559 Antisense, RP_070116_01_F10, Mouse strain C57BL/6J (56 days, male) 11.9
74076114 Antisense, RP_051219_02_G07, Mouse strain C57BL/6J (56 days, male) 5.0
74076066 Antisense, RP_051219_02_F10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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