MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84925.4 nTPM
HPA:84925.4 nTPM
GTEx:65906.9 nTPM
Pig:13885.9 nTPM
Mouse:12252.4 nTPM
Allen mouse:25.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84925.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74804.9
2219 Male, age 76, both hemispheres 83613.2
2586 Male, age 75, left hemisphere 81436.5
2666 Male, age 74, left hemisphere 78309.9
2828 Female, age 72, unknown 76227.6
1870 Female, age 42, unknown 75749.6
1833 Male, age 53, unknown 75423.2
1830 Male, age 51, unknown 74330.2
1827 Male, age 72, unknown 68631.8
2019 Male, age 18, unknown 67485.1
2411 Female, age 72, unknown 66841.7
Dorsal raphe nucleus
nTPM: 68099.8
1828 Male, age 53, unknown 72001.1
2750 Male, age 76, both hemispheres 69899.3
2047 Male, age 72, unknown 68924.0
2016 Female, age 72, unknown 67169.3
2298 Female, age 72, unknown 62505.1
Inferior colliculus
nTPM: 74871.4
2849 Male, age 72, unknown 90170.4
1848 Female, age 42, unknown 73436.9
1890 Male, age 53, unknown 71743.0
2097 Female, age 72, unknown 64135.2
Median raphe nucleus
nTPM: 84925.4
2220 Male, age 76, midline 84925.4
Pedunculopontine tegmental nucleus
nTPM: 73509.0
2334 Male, age 80, both hemispheres 77674.2
2338 Male, age 61, both hemispheres 75801.7
1921 Female, age 85, both hemispheres 67050.9
Periaquaductal grey, anterior
nTPM: 68432.7
2502 Female, age 75, unknown 71402.8
1795 Male, age 51, unknown 67350.2
1947 Male, age 18, unknown 66545.1
Periaquaductal grey, dorsal
nTPM: 71901.7
2850 Male, age 76, both hemispheres 79191.6
2464 Female, age 72, unknown 71165.4
1840 Male, age 53, unknown 68745.5
1831 Male, age 72, unknown 68504.5
Periaquaductal grey, lateral
nTPM: 66775.0
2140 Male, age 76, both hemispheres 69230.6
2053 Male, age 18, unknown 66724.4
2272 Male, age 74, both hemispheres 64369.9
Pretectal area
nTPM: 70461.5
2667 Female, age 75, unknown 76720.6
1944 Female, age 72, unknown 74468.4
2825 Male, age 18, unknown 73535.7
1817 Female, age 42, unknown 73438.4
1816 Male, age 51, unknown 72864.9
1815 Male, age 53, unknown 72791.9
2007 Male, age 72, unknown 71058.3
2407 Male, age 75, both hemispheres 68077.8
2224 Female, age 72, unknown 65706.2
2316 Male, age 76, right hemisphere 63454.3
2273 Male, age 74, both hemispheres 62960.4
Red nucleus
nTPM: 74612.5
2503 Female, age 72, unknown 80675.7
2588 Male, age 74, left hemisphere 78696.0
1954 Female, age 42, unknown 78069.4
1865 Male, age 51, unknown 76474.6
2823 Male, age 76, right hemisphere 76404.4
2584 Male, age 75, left hemisphere 74350.8
2227 Male, age 72, unknown 73945.0
1904 Male, age 53, unknown 73205.0
2785 Male, age 18, unknown 72831.3
2769 Male, age 72, unknown 72434.2
2725 Female, age 75, unknown 70098.7
1821 Female, age 72, unknown 68164.9
Substantia nigra
nTPM: 76142.8
2665 Male, age 74, both hemispheres 96513.9
2699 Male, age 18, unknown 92172.9
1916 Female, age 42, unknown 77140.7
1941 Male, age 53, unknown 73899.6
2241 Male, age 72, unknown 72083.4
1889 Female, age 72, unknown 71139.4
2583 Male, age 75, right hemisphere 70789.7
2409 Female, age 72, unknown 70145.6
1851 Male, age 51, unknown 69883.7
2590 Female, age 75, unknown 67659.4
Superior colliculus
nTPM: 70989.8
2664 Male, age 75, both hemispheres 78077.0
2087 Female, age 72, unknown 72533.0
2587 Male, age 74, left hemisphere 71839.3
2668 Female, age 75, unknown 71155.2
1839 Male, age 51, unknown 70348.1
1913 Female, age 42, unknown 70299.7
1895 Male, age 76, right hemisphere 69927.9
1796 Male, age 53, unknown 69694.9
1995 Male, age 72, unknown 68334.4
2261 Male, age 18, unknown 67688.3
Ventral tegmental area
nTPM: 73972.2
2218 Male, age 76, both hemispheres 84978.2
2223 Female, age 72, unknown 77292.0
1942 Male, age 51, unknown 72896.5
2410 Female, age 72, unknown 70309.6
1915 Female, age 42, unknown 70054.6
2021 Male, age 53, unknown 68302.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65906.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65906.9
Samples: 139

Max nTPM: 254934.5
Min nTPM: 11766.7
Std nTPM: 44229.1
Median nTPM: 53854.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 254934.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 218902.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 181629.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 177912.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 169419.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 167816.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 157266.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 153245.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 147717.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 147707.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 145882.8
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MIDBRAIN - Pig RNA-seqi
Average nTPM 13885.9
Pig sample Sample description nTPM
Midbrain
nTPM: 13885.9
Samples: 4

Max nTPM: 19506.7
Min nTPM: 8955.2
Sample A Female 13047.8
Sample B Female 19506.7
Sample C Male 14034.0
Sample D Male 8955.2
Periaqueductal gray
nTPM: 10671.1
Samples: 3

Max nTPM: 11387.3
Min nTPM: 9275.8
Sample B Female 11350.1
Sample C Male 11387.3
Sample D Male 9275.8
Substantia nigra
nTPM: 11180.3
Samples: 4

Max nTPM: 14745.3
Min nTPM: 6889.5
Sample A Female 14745.3
Sample B Female 10011.5
Sample C Male 13075.0
Sample D Male 6889.5
Superior colliculi
nTPM: 10916.0
Samples: 4

Max nTPM: 14790.2
Min nTPM: 2052.8
Sample A Female 13145.7
Sample B Female 2052.8
Sample C Male 14790.2
Sample D Male 13675.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12252.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 12252.4
Samples: 4

Max nTPM: 12793.7
Min nTPM: 11886.7
Sample A Male 12275.8
Sample B Male 12053.3
Sample C Female 12793.7
Sample D Female 11886.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.1
74357749 Antisense, RP_051219_04_A03, Mouse strain C57BL/6J (56 days, male) 25.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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