MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA:31.3 nTPM
GTEx:45.5 nTPM
FANTOM5:36.4 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:25.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.4
2019 Male, age 18, unknown 35.6
2828 Female, age 72, unknown 31.1
2411 Female, age 72, unknown 30.7
1827 Male, age 72, unknown 29.8
1870 Female, age 42, unknown 28.4
2219 Male, age 76, both hemispheres 28.3
2586 Male, age 75, left hemisphere 28.2
2666 Male, age 74, left hemisphere 27.8
1833 Male, age 53, unknown 27.7
1830 Male, age 51, unknown 27.0
Dorsal raphe nucleus
nTPM: 29.2
2298 Female, age 72, unknown 31.6
2750 Male, age 76, both hemispheres 29.6
1828 Male, age 53, unknown 28.6
2047 Male, age 72, unknown 28.4
2016 Female, age 72, unknown 27.7
Inferior colliculus
nTPM: 27.6
2097 Female, age 72, unknown 30.3
1890 Male, age 53, unknown 28.4
1848 Female, age 42, unknown 25.8
2849 Male, age 72, unknown 25.8
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Pedunculopontine tegmental nucleus
nTPM: 29.5
2338 Male, age 61, both hemispheres 30.9
2334 Male, age 80, both hemispheres 29.4
1921 Female, age 85, both hemispheres 28.1
Periaquaductal grey, anterior
nTPM: 30.6
2502 Female, age 75, unknown 31.8
1795 Male, age 51, unknown 30.8
1947 Male, age 18, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 27.3
1831 Male, age 72, unknown 28.0
2464 Female, age 72, unknown 27.6
2850 Male, age 76, both hemispheres 26.9
1840 Male, age 53, unknown 26.8
Periaquaductal grey, lateral
nTPM: 28.3
2272 Male, age 74, both hemispheres 31.4
2053 Male, age 18, unknown 27.2
2140 Male, age 76, both hemispheres 26.1
Pretectal area
nTPM: 31.3
2007 Male, age 72, unknown 36.4
1816 Male, age 51, unknown 35.1
1817 Female, age 42, unknown 33.6
1944 Female, age 72, unknown 32.4
2273 Male, age 74, both hemispheres 31.9
1815 Male, age 53, unknown 30.7
2667 Female, age 75, unknown 30.5
2407 Male, age 75, both hemispheres 29.2
2224 Female, age 72, unknown 28.8
2316 Male, age 76, right hemisphere 28.6
2825 Male, age 18, unknown 26.8
Red nucleus
nTPM: 30.3
2785 Male, age 18, unknown 32.9
2725 Female, age 75, unknown 31.8
2503 Female, age 72, unknown 30.5
1865 Male, age 51, unknown 30.4
1904 Male, age 53, unknown 30.4
2769 Male, age 72, unknown 30.3
2588 Male, age 74, left hemisphere 30.0
1821 Female, age 72, unknown 29.8
1954 Female, age 42, unknown 29.6
2227 Male, age 72, unknown 29.6
2823 Male, age 76, right hemisphere 29.5
2584 Male, age 75, left hemisphere 29.2
Substantia nigra
nTPM: 30.5
1916 Female, age 42, unknown 34.1
1851 Male, age 51, unknown 31.9
1889 Female, age 72, unknown 31.5
2409 Female, age 72, unknown 31.0
1941 Male, age 53, unknown 30.8
2665 Male, age 74, both hemispheres 30.6
2590 Female, age 75, unknown 29.8
2583 Male, age 75, right hemisphere 29.5
2699 Male, age 18, unknown 27.8
2241 Male, age 72, unknown 27.6
Superior colliculus
nTPM: 29.8
2261 Male, age 18, unknown 31.6
2587 Male, age 74, left hemisphere 31.5
2087 Female, age 72, unknown 31.3
1796 Male, age 53, unknown 31.2
1913 Female, age 42, unknown 30.6
1995 Male, age 72, unknown 30.6
2668 Female, age 75, unknown 28.4
1839 Male, age 51, unknown 27.7
2664 Male, age 75, both hemispheres 27.6
1895 Male, age 76, right hemisphere 27.5
Ventral tegmental area
nTPM: 29.7
1915 Female, age 42, unknown 30.8
2218 Male, age 76, both hemispheres 30.2
2410 Female, age 72, unknown 29.8
2021 Male, age 53, unknown 29.7
1942 Male, age 51, unknown 29.5
2223 Female, age 72, unknown 28.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.5
Samples: 139

Max nTPM: 89.0
Min nTPM: 23.0
Std nTPM: 11.5
Median nTPM: 44.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 89.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 84.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 76.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 75.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 75.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 71.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 69.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 64.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 63.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.4
FF:10158-103A5 76 years, female 36.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.6
Min nTPM: 9.0
Sample A Female 9.6
Sample B Female 10.6
Sample C Male 9.3
Sample D Male 9.0
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 9.3
Min nTPM: 6.8
Sample B Female 8.8
Sample C Male 9.3
Sample D Male 6.8
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 12.4
Min nTPM: 5.1
Sample A Female 12.4
Sample B Female 11.3
Sample C Male 10.9
Sample D Male 5.1
Superior colliculi
nTPM: 12.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 8.3
Sample A Female 12.4
Sample B Female 19.9
Sample C Male 8.5
Sample D Male 8.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 32.1
Min nTPM: 22.2
Sample A Male 32.1
Sample B Male 22.7
Sample C Female 22.2
Sample D Female 24.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
633282 Antisense, RP_040907_02_D09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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