BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.1 nTPM
HPA:40.1 nTPM
GTEx:135.4 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:3.9 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.1
2289 Male, age 61, right hemisphere 71.7
2290 Female, age 72, unknown 63.5
2288 Male, age 75, left hemisphere 56.2
1781 Male, age 74, unknown 33.8
2846 Female, age 79, unknown 30.0
2481 Female, age 94, left hemisphere 24.4
1854 Male, age 80, left hemisphere 22.0
1857 Female, age 85, left hemisphere 18.9
Claustrum
nTPM: 33.1
2284 Female, age 91, both hemispheres 50.5
2568 Male, age 61, both hemispheres 43.4
2645 Female, age 72, unknown 39.8
2491 Male, age 75, both hemispheres 35.7
2196 Female, age 79, unknown 31.3
2292 Female, age 85, both hemispheres 31.0
1956 Male, age 74, unknown 27.9
2198 Male, age 80, both hemispheres 27.9
2392 Female, age 94, both hemispheres 10.1
Globus pallidus, externus
nTPM: 7.7
2646 Male, age 61, right hemisphere 16.6
2772 Female, age 79, unknown 7.2
2567 Female, age 72, unknown 6.7
2395 Male, age 75, both hemispheres 4.4
1996 Male, age 80, right hemisphere 3.4
Globus pallidus, internus
nTPM: 4.5
2483 Female, age 94, right hemisphere 15.4
2566 Female, age 72, unknown 7.4
2778 Female, age 91, both hemispheres 3.1
1818 Male, age 74, unknown 2.6
2111 Female, age 85, right hemisphere 1.2
2287 Male, age 75, right hemisphere 0.9
2037 Male, age 80, right hemisphere 0.8
Nucleus accumbens
nTPM: 26.0
2698 Female, age 72, unknown 33.6
1783 Male, age 74, unknown 32.7
2286 Male, age 75, left hemisphere 30.8
1806 Female, age 85, left hemisphere 28.2
1856 Female, age 91, right hemisphere 27.8
2732 Male, age 80, right hemisphere 27.4
2824 Male, age 61, right hemisphere 15.2
2391 Female, age 94, left hemisphere 12.2
Nucleus basalis of Meynert
nTPM: 31.8
2484 Female, age 94, left hemisphere 42.5
2569 Male, age 61, both hemispheres 39.8
2821 Male, age 75, both hemispheres 30.3
2393 Male, age 80, right hemisphere 14.8
Nucleus of the diagonal band
nTPM: 23.7
1979 Male, age 74, unknown 33.3
2195 Female, age 85, both hemispheres 31.9
2775 Male, age 80, right hemisphere 22.3
2029 Male, age 61, right hemisphere 21.7
1812 Female, age 91, both hemispheres 9.3
Olfactory tubercle
nTPM: 24.8
1998 Female, age 91, both hemispheres 34.8
2487 Female, age 94, left hemisphere 29.7
2856 Male, age 75, right hemisphere 26.9
1846 Male, age 80, right hemisphere 7.6
Putamen
nTPM: 36.3
2489 Female, age 72, unknown 65.5
2647 Male, age 75, left hemisphere 56.2
1937 Female, age 91, right hemisphere 36.1
2482 Female, age 94, left hemisphere 29.7
1838 Male, age 80, right hemisphere 27.3
1829 Male, age 74, unknown 22.4
2466 Female, age 79, unknown 17.2
Septal nuclei
nTPM: 24.5
2059 Female, age 85, both hemispheres 44.5
1960 Male, age 74, unknown 39.4
2629 Female, age 94, right hemisphere 25.9
2009 Female, age 91, both hemispheres 19.1
2031 Female, age 72, unknown 17.4
2394 Male, age 61, left hemisphere 12.9
2199 Male, age 80, right hemisphere 12.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 135.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 123.5
Samples: 246

Max nTPM: 289.5
Min nTPM: 17.5
Std nTPM: 51.0
Median nTPM: 117.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 289.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 285.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 269.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 268.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 254.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 254.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 244.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 243.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 233.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 226.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 225.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 135.4
Samples: 246

Max nTPM: 408.5
Min nTPM: 5.5
Std nTPM: 71.9
Median nTPM: 125.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 408.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 386.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 369.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 365.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 345.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 344.0
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 328.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 317.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 310.6
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 294.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 283.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 133.2
Samples: 205

Max nTPM: 373.9
Min nTPM: 11.3
Std nTPM: 53.6
Median nTPM: 132.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 373.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 277.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 268.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 264.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 246.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 244.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 240.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 237.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 233.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 220.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 218.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 1.5
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.1
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral pallidum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.0
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.9
Sample A Male 2.9
Sample B Male 4.5
Sample C Female 4.4
Sample D Female 4.0
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.5
Sample A Male 0.5
Sample B Male 1.0
Sample C Female 1.6
Sample D Female 0.7
Ventral forebrain
nTPM: 2.3
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.9
Sample A Male 2.2
Sample B Male 1.9
Sample C Female 3.2
Sample D Female 2.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
75990859 Antisense, RP_060608_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
75990859 Antisense, RP_060608_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.