BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.5 nTPM
HPA:3.5 nTPM
GTEx:0.5 nTPM
FANTOM5:0.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA042570
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.2
2289 Male, age 61, right hemisphere 5.5
2290 Female, age 72, unknown 4.0
1857 Female, age 85, left hemisphere 3.2
2846 Female, age 79, unknown 3.0
1781 Male, age 74, unknown 2.9
1854 Male, age 80, left hemisphere 2.6
2288 Male, age 75, left hemisphere 2.6
2481 Female, age 94, left hemisphere 1.9
Claustrum
nTPM: 1.7
2196 Female, age 79, unknown 2.4
2284 Female, age 91, both hemispheres 2.0
2568 Male, age 61, both hemispheres 1.9
2392 Female, age 94, both hemispheres 1.8
2491 Male, age 75, both hemispheres 1.8
2645 Female, age 72, unknown 1.5
1956 Male, age 74, unknown 1.4
2198 Male, age 80, both hemispheres 1.4
2292 Female, age 85, both hemispheres 1.4
Globus pallidus, externus
nTPM: 2.8
2646 Male, age 61, right hemisphere 6.3
2567 Female, age 72, unknown 2.8
2772 Female, age 79, unknown 1.8
1996 Male, age 80, right hemisphere 1.6
2395 Male, age 75, both hemispheres 1.6
Globus pallidus, internus
nTPM: 2.1
2483 Female, age 94, right hemisphere 2.9
2566 Female, age 72, unknown 2.5
2778 Female, age 91, both hemispheres 2.2
1818 Male, age 74, unknown 2.1
2287 Male, age 75, right hemisphere 1.8
2037 Male, age 80, right hemisphere 1.7
2111 Female, age 85, right hemisphere 1.5
Nucleus accumbens
nTPM: 2.7
1783 Male, age 74, unknown 3.6
2824 Male, age 61, right hemisphere 3.2
1806 Female, age 85, left hemisphere 3.0
2286 Male, age 75, left hemisphere 3.0
2698 Female, age 72, unknown 2.8
2391 Female, age 94, left hemisphere 2.6
2732 Male, age 80, right hemisphere 2.2
1856 Female, age 91, right hemisphere 1.5
Nucleus basalis of Meynert
nTPM: 2.9
2569 Male, age 61, both hemispheres 5.5
2484 Female, age 94, left hemisphere 2.8
2393 Male, age 80, right hemisphere 2.3
2821 Male, age 75, both hemispheres 0.8
Nucleus of the diagonal band
nTPM: 0.9
1979 Male, age 74, unknown 2.9
2195 Female, age 85, both hemispheres 1.1
2775 Male, age 80, right hemisphere 0.4
1812 Female, age 91, both hemispheres 0.0
2029 Male, age 61, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.6
2487 Female, age 94, left hemisphere 0.9
1846 Male, age 80, right hemisphere 0.8
2856 Male, age 75, right hemisphere 0.4
1998 Female, age 91, both hemispheres 0.3
Putamen
nTPM: 3.5
2647 Male, age 75, left hemisphere 5.6
2489 Female, age 72, unknown 4.1
2466 Female, age 79, unknown 3.7
1838 Male, age 80, right hemisphere 3.0
1937 Female, age 91, right hemisphere 2.8
2482 Female, age 94, left hemisphere 2.7
1829 Male, age 74, unknown 2.4
Septal nuclei
nTPM: 1.4
2199 Male, age 80, right hemisphere 4.1
1960 Male, age 74, unknown 1.7
2059 Female, age 85, both hemispheres 1.7
2031 Female, age 72, unknown 1.2
2394 Male, age 61, left hemisphere 0.5
2629 Female, age 94, right hemisphere 0.4
2009 Female, age 91, both hemispheres 0.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.5
Samples: 246

Max nTPM: 5.6
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 0.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 5.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 2.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.5
Samples: 246

Max nTPM: 4.9
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.4
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 4.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 4.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 3.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 3.5
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 2.8
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 2.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 2.2
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 2.0
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 1.8
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 1.7
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 1.6
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Brain - Putamen (basal ganglia)
Average nTPM: 0.5
Samples: 205

Max nTPM: 3.7
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 3.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 2.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 2.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 2.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 2.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 1.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.1
FF:10164-103B2 76 years, female 0.1
Globus pallidus
Scaled Tags Per Million: 0.1
FF:10161-103A8 76 years, female 0.3
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

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