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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:0.4 nTPM
HPA:0.4 nTPM
GTEx:577.6 nTPM
FANTOM5:942.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 0.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 0.4
2194 Female, age 79, both hemispheres 1.1
1981 Female, age 72, midline 0.5
2048 Male, age 55, midline 0.4
2565 Male, age 75, midline 0.2
2816 Male, age 47, midline 0.0
Cervical spinal cord, dorsal horn
nTPM: 0.2
1877 Male, age 55, unknown 0.4
2296 Male, age 66, both hemispheres 0.4
2297 Male, age 75, both hemispheres 0.2
2069 Male, age 47, both hemispheres 0.0
2173 Female, age 72, unknown 0.0
2721 Male, age 90, both hemispheres 0.0
Cervical spinal cord, ventral horn
nTPM: 0.2
2295 Male, age 66, both hemispheres 0.8
2068 Male, age 55, unknown 0.4
2480 Male, age 75, both hemispheres 0.2
2098 Female, age 72, unknown 0.0
2809 Male, age 90, both hemispheres 0.0
2820 Female, age 79, both hemispheres 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 577.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 577.6
Samples: 159

Max nTPM: 7923.9
Min nTPM: 14.3
Std nTPM: 836.1
Median nTPM: 343.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 7923.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 4155.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2830.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 2583.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2388.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2237.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2236.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2148.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1922.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1899.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1696.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1575.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1309.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1303.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1288.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1154.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1125.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1115.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1075.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1043.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1019.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 983.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 973.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 969.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 961.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 959.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 934.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 823.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 808.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 807.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 794.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 793.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 780.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 750.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 721.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 708.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 699.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 674.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 666.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 603.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 602.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 579.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 578.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 568.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 552.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 517.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 509.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 505.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 490.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 489.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 489.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 484.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 478.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 476.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 469.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 469.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 468.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 454.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 449.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 446.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 441.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 424.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 424.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 421.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 419.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 413.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 408.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 407.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 399.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 397.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 396.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 394.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 385.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 384.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 378.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 365.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 352.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 351.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 351.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 343.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 342.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 328.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 326.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 322.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 318.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 318.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 317.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 314.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 314.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 308.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 293.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 289.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 281.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 271.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 270.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 270.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 269.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 268.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 263.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 258.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 248.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 247.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 240.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 234.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 234.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 233.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 230.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 228.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 222.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 218.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 214.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 214.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 204.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 201.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 199.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 197.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 197.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 193.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 186.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 186.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 184.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 177.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 174.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 172.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 171.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 170.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 169.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 168.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 162.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 147.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 144.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 144.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 140.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 139.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 133.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 123.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 119.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 110.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 107.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 107.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 102.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 101.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 99.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 96.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 94.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 79.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 77.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 68.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 51.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 49.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 45.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 44.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 26.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 24.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 22.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 21.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 14.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 942.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 942.1
FF:10159-103A6 76 years, female 1164.8
FF:10181-103D1 60 years, female 719.4

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