We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HLA-C
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • HLA-C
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:0.7 nTPM
HPA:0.7 nTPM
GTEx:150.0 nTPM
FANTOM5:116.2 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Amygdala
nTPM: 0.7
2514 Male, age 75, right hemisphere 1.6
2695 Female, age 67, right hemisphere 1.2
1987 Female, age 91, left hemisphere 0.5
2814 Male, age 76, right hemisphere 0.2
2517 Female, age 94, left hemisphere 0.0
Basal amygdala
nTPM: 0.2
1955 Male, age 76, both hemispheres 0.7
2110 Male, age 80, left hemisphere 0.3
2609 Male, age 75, right hemisphere 0.1
2243 Female, age 91, right hemisphere 0.0
2685 Female, age 94, left hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 0.2
1905 Male, age 76, both hemispheres 0.3
2826 Female, age 94, left hemisphere 0.3
2239 Male, age 80, left hemisphere 0.2
2701 Female, age 91, right hemisphere 0.2
2515 Male, age 75, right hemisphere 0.0
Corticomedial amygdala
nTPM: 0.3
2242 Female, age 91, right hemisphere 0.6
2535 Female, age 67, right hemisphere 0.5
2829 Male, age 80, left hemisphere 0.3
2428 Male, age 75, right hemisphere 0.2
2240 Male, age 76, both hemispheres 0.0
2429 Female, age 94, left hemisphere 0.0
Lateral amygdala
nTPM: 0.6
2830 Female, age 67, right hemisphere 1.6
1883 Male, age 76, both hemispheres 0.5
2255 Female, age 91, right hemisphere 0.5
2256 Male, age 80, left hemisphere 0.4
2516 Male, age 75, right hemisphere 0.2
2534 Female, age 94, left hemisphere 0.1
Stria terminalis, bed nucleus
nTPM: 0.0
2486 Female, age 94, both hemispheres 0.1
1974 Female, age 91, both hemispheres 0.0
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 150.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 150.0
Samples: 152

Max nTPM: 1997.5
Min nTPM: 29.2
Std nTPM: 166.6
Median nTPM: 125.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1997.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 521.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 403.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 382.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 297.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 294.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 289.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 279.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 277.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 261.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 261.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 261.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 232.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 227.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 225.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 216.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 210.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 207.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 205.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 203.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 203.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 202.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 200.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 199.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 199.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 198.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 196.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 195.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 192.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 187.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 184.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 182.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 181.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 180.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 178.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 174.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 173.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 172.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 171.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 170.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 167.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 164.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 164.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 162.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 159.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 158.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 157.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 155.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 154.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 152.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 151.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 151.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 150.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 149.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 143.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 143.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 141.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 138.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 138.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 137.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 137.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 136.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 135.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 131.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 131.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 130.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 130.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 129.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 129.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 129.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 127.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 125.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 125.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 122.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 122.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 121.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 119.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 119.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 115.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 115.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 115.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 115.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 113.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 113.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 113.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 112.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 110.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 108.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 107.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 106.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 105.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 103.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 103.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 103.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 103.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 102.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 101.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 100.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 98.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 98.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 98.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 96.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 95.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 95.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 94.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 94.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 93.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 93.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 92.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 87.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 87.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 85.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 85.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 84.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 83.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 83.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 81.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 78.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 78.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 77.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 77.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 77.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 74.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 73.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 73.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 70.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 69.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 68.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 66.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 65.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 65.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 64.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 58.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 58.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 57.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 53.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 52.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 50.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 44.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 43.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 42.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 37.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 30.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 29.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 116.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 116.2
FF:10151-102I7 76 years, female 116.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.