MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA:8.6 nTPM
GTEx:39.6 nTPM
FANTOM5:53.3 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:71.8 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.0
2019 Male, age 18, unknown 9.6
2586 Male, age 75, left hemisphere 8.8
1827 Male, age 72, unknown 8.5
2828 Female, age 72, unknown 8.1
1870 Female, age 42, unknown 7.8
1830 Male, age 51, unknown 7.7
2219 Male, age 76, both hemispheres 7.6
2666 Male, age 74, left hemisphere 7.6
2411 Female, age 72, unknown 7.4
1833 Male, age 53, unknown 7.2
Dorsal raphe nucleus
nTPM: 7.6
1828 Male, age 53, unknown 8.5
2298 Female, age 72, unknown 7.6
2750 Male, age 76, both hemispheres 7.5
2047 Male, age 72, unknown 7.3
2016 Female, age 72, unknown 6.8
Inferior colliculus
nTPM: 8.1
2849 Male, age 72, unknown 8.6
1848 Female, age 42, unknown 8.4
2097 Female, age 72, unknown 8.0
1890 Male, age 53, unknown 7.5
Median raphe nucleus
nTPM: 8.0
2220 Male, age 76, midline 8.0
Pedunculopontine tegmental nucleus
nTPM: 7.8
1921 Female, age 85, both hemispheres 8.5
2334 Male, age 80, both hemispheres 7.9
2338 Male, age 61, both hemispheres 7.0
Periaquaductal grey, anterior
nTPM: 8.5
1947 Male, age 18, unknown 8.7
1795 Male, age 51, unknown 8.6
2502 Female, age 75, unknown 8.2
Periaquaductal grey, dorsal
nTPM: 7.5
1840 Male, age 53, unknown 7.8
1831 Male, age 72, unknown 7.5
2464 Female, age 72, unknown 7.5
2850 Male, age 76, both hemispheres 7.3
Periaquaductal grey, lateral
nTPM: 7.3
2272 Male, age 74, both hemispheres 7.7
2140 Male, age 76, both hemispheres 7.1
2053 Male, age 18, unknown 6.9
Pretectal area
nTPM: 7.7
1944 Female, age 72, unknown 8.4
2667 Female, age 75, unknown 8.3
2007 Male, age 72, unknown 8.2
1815 Male, age 53, unknown 7.8
1816 Male, age 51, unknown 7.8
2316 Male, age 76, right hemisphere 7.8
2407 Male, age 75, both hemispheres 7.8
1817 Female, age 42, unknown 7.5
2273 Male, age 74, both hemispheres 7.3
2224 Female, age 72, unknown 6.8
2825 Male, age 18, unknown 6.8
Red nucleus
nTPM: 8.0
1821 Female, age 72, unknown 8.9
2785 Male, age 18, unknown 8.6
2503 Female, age 72, unknown 8.4
1954 Female, age 42, unknown 8.1
2584 Male, age 75, left hemisphere 8.0
2725 Female, age 75, unknown 8.0
2588 Male, age 74, left hemisphere 7.8
2769 Male, age 72, unknown 7.7
1904 Male, age 53, unknown 7.6
1865 Male, age 51, unknown 7.5
2227 Male, age 72, unknown 7.5
2823 Male, age 76, right hemisphere 7.5
Substantia nigra
nTPM: 8.5
2409 Female, age 72, unknown 11.3
1916 Female, age 42, unknown 9.2
1851 Male, age 51, unknown 9.1
2241 Male, age 72, unknown 8.8
1941 Male, age 53, unknown 8.7
1889 Female, age 72, unknown 8.2
2699 Male, age 18, unknown 8.0
2665 Male, age 74, both hemispheres 7.7
2583 Male, age 75, right hemisphere 7.3
2590 Female, age 75, unknown 7.2
Superior colliculus
nTPM: 8.1
1895 Male, age 76, right hemisphere 9.2
2664 Male, age 75, both hemispheres 9.1
2087 Female, age 72, unknown 9.0
2668 Female, age 75, unknown 9.0
1796 Male, age 53, unknown 8.3
2261 Male, age 18, unknown 7.6
1839 Male, age 51, unknown 7.5
1995 Male, age 72, unknown 7.3
1913 Female, age 42, unknown 7.2
2587 Male, age 74, left hemisphere 7.1
Ventral tegmental area
nTPM: 8.6
1942 Male, age 51, unknown 9.3
1915 Female, age 42, unknown 9.0
2410 Female, age 72, unknown 9.0
2021 Male, age 53, unknown 8.4
2218 Male, age 76, both hemispheres 8.4
2223 Female, age 72, unknown 7.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.6
Samples: 139

Max nTPM: 88.4
Min nTPM: 17.7
Std nTPM: 13.4
Median nTPM: 37.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 78.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 75.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 71.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 69.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 65.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 64.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 63.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 62.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.3
FF:10158-103A5 76 years, female 53.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Midbrain
nTPM: 37.5
Samples: 4

Max nTPM: 44.4
Min nTPM: 30.7
Sample A Female 33.5
Sample B Female 30.7
Sample C Male 44.4
Sample D Male 41.3
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 35.4
Min nTPM: 30.3
Sample B Female 30.3
Sample C Male 35.4
Sample D Male 30.4
Substantia nigra
nTPM: 34.7
Samples: 4

Max nTPM: 47.5
Min nTPM: 22.2
Sample A Female 47.5
Sample B Female 22.2
Sample C Male 41.9
Sample D Male 27.2
Superior colliculi
nTPM: 40.9
Samples: 4

Max nTPM: 51.7
Min nTPM: 19.3
Sample A Female 51.7
Sample B Female 19.3
Sample C Male 47.9
Sample D Male 44.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 76.6
Min nTPM: 68.4
Sample A Male 68.4
Sample B Male 69.8
Sample C Female 72.5
Sample D Female 76.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69202555 Antisense, RP_050324_03_H01, Mouse strain C57BL/6J (56 days, male) 6.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.