BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.7 nTPM
HPA:0.7 nTPM
GTEx:53.5 nTPM
FANTOM5:82.4 Scaled Tags Per Million
Pig:99.5 nTPM
Mouse:126.7 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043266
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.7
2846 Female, age 79, unknown 1.3
2481 Female, age 94, left hemisphere 0.7
1854 Male, age 80, left hemisphere 0.6
1857 Female, age 85, left hemisphere 0.6
2288 Male, age 75, left hemisphere 0.6
2289 Male, age 61, right hemisphere 0.6
2290 Female, age 72, unknown 0.6
1781 Male, age 74, unknown 0.3
Claustrum
nTPM: 0.6
1956 Male, age 74, unknown 0.8
2392 Female, age 94, both hemispheres 0.7
2198 Male, age 80, both hemispheres 0.6
2284 Female, age 91, both hemispheres 0.6
2292 Female, age 85, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.6
2568 Male, age 61, both hemispheres 0.6
2645 Female, age 72, unknown 0.6
2196 Female, age 79, unknown 0.2
Globus pallidus, externus
nTPM: 0.6
1996 Male, age 80, right hemisphere 0.6
2395 Male, age 75, both hemispheres 0.6
2567 Female, age 72, unknown 0.6
2646 Male, age 61, right hemisphere 0.6
2772 Female, age 79, unknown 0.6
Globus pallidus, internus
nTPM: 0.7
2111 Female, age 85, right hemisphere 0.9
2483 Female, age 94, right hemisphere 0.7
1818 Male, age 74, unknown 0.6
2037 Male, age 80, right hemisphere 0.6
2287 Male, age 75, right hemisphere 0.6
2566 Female, age 72, unknown 0.6
2778 Female, age 91, both hemispheres 0.6
Nucleus accumbens
nTPM: 0.7
1783 Male, age 74, unknown 1.0
2391 Female, age 94, left hemisphere 0.7
1806 Female, age 85, left hemisphere 0.6
1856 Female, age 91, right hemisphere 0.6
2286 Male, age 75, left hemisphere 0.6
2698 Female, age 72, unknown 0.6
2732 Male, age 80, right hemisphere 0.6
2824 Male, age 61, right hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 0.6
2484 Female, age 94, left hemisphere 0.7
2393 Male, age 80, right hemisphere 0.6
2569 Male, age 61, both hemispheres 0.6
2821 Male, age 75, both hemispheres 0.6
Nucleus of the diagonal band
nTPM: 0.6
1979 Male, age 74, unknown 0.7
1812 Female, age 91, both hemispheres 0.6
2029 Male, age 61, right hemisphere 0.6
2195 Female, age 85, both hemispheres 0.6
2775 Male, age 80, right hemisphere 0.6
Olfactory tubercle
nTPM: 0.6
2487 Female, age 94, left hemisphere 0.7
1846 Male, age 80, right hemisphere 0.6
1998 Female, age 91, both hemispheres 0.6
2856 Male, age 75, right hemisphere 0.6
Putamen
nTPM: 0.7
1829 Male, age 74, unknown 1.0
2466 Female, age 79, unknown 0.9
2482 Female, age 94, left hemisphere 0.7
1838 Male, age 80, right hemisphere 0.6
1937 Female, age 91, right hemisphere 0.6
2489 Female, age 72, unknown 0.6
2647 Male, age 75, left hemisphere 0.6
Septal nuclei
nTPM: 0.7
1960 Male, age 74, unknown 1.1
2629 Female, age 94, right hemisphere 0.7
2009 Female, age 91, both hemispheres 0.6
2031 Female, age 72, unknown 0.6
2059 Female, age 85, both hemispheres 0.6
2199 Male, age 80, right hemisphere 0.6
2394 Male, age 61, left hemisphere 0.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.9
Samples: 246

Max nTPM: 77.7
Min nTPM: 31.2
Std nTPM: 7.9
Median nTPM: 47.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 77.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 72.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 70.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 70.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 69.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 69.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 69.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 68.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 68.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 65.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 65.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 53.5
Samples: 246

Max nTPM: 77.5
Min nTPM: 29.6
Std nTPM: 8.1
Median nTPM: 53.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 77.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 76.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 76.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 70.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 68.8
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 68.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 68.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 68.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 68.3
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 68.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 66.8
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Brain - Putamen (basal ganglia)
Average nTPM: 50.5
Samples: 205

Max nTPM: 71.8
Min nTPM: 35.3
Std nTPM: 6.8
Median nTPM: 49.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 71.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 68.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 68.4
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 68.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 65.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 64.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 63.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 63.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 62.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 62.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 62.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.1
FF:10164-103B2 76 years, female 54.1
Globus pallidus
Scaled Tags Per Million: 42.3
FF:10161-103A8 76 years, female 50.0
FF:10175-103C4 60 years, female 34.7
Nucleus accumbens
Scaled Tags Per Million: 82.4
FF:10037-101F1 23-56 years, mixed 82.4
Putamen
Scaled Tags Per Million: 65.4
FF:10176-103C5 60 years, female 65.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 99.5
Pig sample Sample description nTPM
Caudate
nTPM: 82.1
Samples: 4

Max nTPM: 98.5
Min nTPM: 72.9
Sample A Female 73.5
Sample B Female 83.6
Sample C Male 98.5
Sample D Male 72.9
Putamen
nTPM: 99.5
Samples: 4

Max nTPM: 124.5
Min nTPM: 79.3
Sample A Female 86.5
Sample B Female 79.3
Sample C Male 124.5
Sample D Male 107.7
Septum
nTPM: 74.9
Samples: 4

Max nTPM: 79.4
Min nTPM: 69.9
Sample A Female 79.4
Sample B Female 69.9
Sample C Male 78.7
Sample D Male 71.5
Ventral pallidum
nTPM: 79.5
Samples: 4

Max nTPM: 87.2
Min nTPM: 70.7
Sample A Female 70.7
Sample B Female 84.7
Sample C Male 87.2
Sample D Male 75.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 126.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 115.3
Samples: 4

Max nTPM: 126.4
Min nTPM: 107.2
Sample A Male 114.6
Sample B Male 126.4
Sample C Female 107.2
Sample D Female 112.9
Septum
nTPM: 126.7
Samples: 4

Max nTPM: 133.1
Min nTPM: 115.7
Sample A Male 131.9
Sample B Male 133.1
Sample C Female 125.9
Sample D Female 115.7
Ventral forebrain
nTPM: 111.0
Samples: 4

Max nTPM: 133.7
Min nTPM: 94.1
Sample A Male 94.1
Sample B Male 113.3
Sample C Female 133.7
Sample D Female 103.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
532738 Antisense, RP_040825_01_H12, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.0
532738 Antisense, RP_040825_01_H12, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

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