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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:10.2 nTPM
HPA:10.2 nTPM
GTEx:169.8 nTPM
FANTOM5:254.7 Scaled Tags Per Million
Pig:226.4 nTPM
Mouse:359.5 nTPM
Allen mouse:25.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Amygdala
nTPM: 0.0
2695 Female, age 67, right hemisphere 0.4
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
2517 Female, age 94, left hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 10.2
2243 Female, age 91, right hemisphere 25.0
2685 Female, age 94, left hemisphere 13.3
2827 Female, age 67, right hemisphere 12.5
2609 Male, age 75, right hemisphere 10.6
1955 Male, age 76, both hemispheres 0.0
2110 Male, age 80, left hemisphere 0.0
Central amygdala
nTPM: 2.1
2701 Female, age 91, right hemisphere 6.5
2826 Female, age 94, left hemisphere 4.0
1905 Male, age 76, both hemispheres 0.0
2239 Male, age 80, left hemisphere 0.0
2515 Male, age 75, right hemisphere 0.0
Corticomedial amygdala
nTPM: 3.8
2535 Female, age 67, right hemisphere 12.5
2242 Female, age 91, right hemisphere 8.7
2240 Male, age 76, both hemispheres 1.6
2428 Male, age 75, right hemisphere 0.0
2429 Female, age 94, left hemisphere 0.0
2829 Male, age 80, left hemisphere 0.0
Lateral amygdala
nTPM: 1.4
2255 Female, age 91, right hemisphere 8.7
1883 Male, age 76, both hemispheres 0.0
2256 Male, age 80, left hemisphere 0.0
2516 Male, age 75, right hemisphere 0.0
2534 Female, age 94, left hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 0.0
1974 Female, age 91, both hemispheres 0.0
2201 Male, age 74, unknown 0.0
2486 Female, age 94, both hemispheres 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 169.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 169.8
Samples: 152

Max nTPM: 468.6
Min nTPM: 10.9
Std nTPM: 65.2
Median nTPM: 166.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 468.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 330.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 323.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 288.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 277.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 273.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 269.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 262.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 261.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 258.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 257.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 253.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 253.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 249.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 246.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 242.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 239.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 235.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 235.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 232.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 231.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 230.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 230.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 228.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 227.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 226.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 225.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 223.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 222.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 221.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 221.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 219.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 219.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 219.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 219.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 218.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 217.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 217.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 217.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 216.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 214.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 213.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 213.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 213.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 213.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 212.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 212.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 211.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 210.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 210.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 208.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 207.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 203.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 203.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 202.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 200.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 200.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 199.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 196.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 196.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 192.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 189.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 189.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 188.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 187.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 187.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 182.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 180.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 179.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 178.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 172.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 172.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 170.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 169.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 166.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 166.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 166.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 165.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 164.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 163.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 163.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 162.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 161.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 161.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 156.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 154.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 153.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 153.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 151.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 148.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 148.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 147.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 147.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 144.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 141.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 139.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 134.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 133.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 131.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 130.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 130.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 130.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 127.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 127.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 125.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 125.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 123.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 119.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 119.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 118.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 118.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 117.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 117.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 113.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 112.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 111.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 111.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 110.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 110.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 110.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 109.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 109.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 107.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 106.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 106.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 102.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 102.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 100.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 100.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 100.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 100.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 99.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 98.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 95.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 87.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 84.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 84.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 80.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 78.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 75.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 72.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 70.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 63.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 63.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 60.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 55.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 38.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 254.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 254.7
FF:10151-102I7 76 years, female 254.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 226.4
Pig sample Sample description nTPM
Amygdala
nTPM: 226.5
Samples: 4

Max nTPM: 303.2
Min nTPM: 173.4
Sample A Female 303.2
Sample B Female 173.4
Sample C Male 212.3
Sample D Male 216.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 359.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 359.5
Samples: 4

Max nTPM: 374.8
Min nTPM: 345.1
Sample A Male 368.1
Sample B Male 345.1
Sample C Female 374.8
Sample D Female 350.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 25.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.6
68862120 Antisense, RP_050301_01_E12, Mouse strain C57BL/6J (56 days, male) 25.6

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