MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.8 nTPM
HPA:53.8 nTPM
GTEx:132.9 nTPM
FANTOM5:126.5 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:132.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.0
2219 Male, age 76, both hemispheres 64.0
2411 Female, age 72, unknown 59.5
2586 Male, age 75, left hemisphere 55.7
1833 Male, age 53, unknown 54.4
2019 Male, age 18, unknown 52.3
1830 Male, age 51, unknown 51.1
2828 Female, age 72, unknown 50.7
1870 Female, age 42, unknown 50.4
1827 Male, age 72, unknown 48.2
2666 Male, age 74, left hemisphere 43.4
Dorsal raphe nucleus
nTPM: 52.7
2750 Male, age 76, both hemispheres 57.2
1828 Male, age 53, unknown 55.2
2016 Female, age 72, unknown 53.2
2047 Male, age 72, unknown 52.7
2298 Female, age 72, unknown 45.2
Inferior colliculus
nTPM: 48.2
1890 Male, age 53, unknown 50.0
2097 Female, age 72, unknown 49.2
1848 Female, age 42, unknown 48.0
2849 Male, age 72, unknown 45.4
Median raphe nucleus
nTPM: 47.4
2220 Male, age 76, midline 47.4
Pedunculopontine tegmental nucleus
nTPM: 46.6
2334 Male, age 80, both hemispheres 48.2
1921 Female, age 85, both hemispheres 47.7
2338 Male, age 61, both hemispheres 43.8
Periaquaductal grey, anterior
nTPM: 48.7
2502 Female, age 75, unknown 52.2
1795 Male, age 51, unknown 47.0
1947 Male, age 18, unknown 46.9
Periaquaductal grey, dorsal
nTPM: 45.7
2464 Female, age 72, unknown 47.6
2850 Male, age 76, both hemispheres 46.5
1831 Male, age 72, unknown 45.7
1840 Male, age 53, unknown 42.8
Periaquaductal grey, lateral
nTPM: 40.4
2053 Male, age 18, unknown 43.0
2272 Male, age 74, both hemispheres 39.5
2140 Male, age 76, both hemispheres 38.7
Pretectal area
nTPM: 45.7
2667 Female, age 75, unknown 51.5
2007 Male, age 72, unknown 48.7
1817 Female, age 42, unknown 47.8
1816 Male, age 51, unknown 47.0
1815 Male, age 53, unknown 46.9
1944 Female, age 72, unknown 46.6
2224 Female, age 72, unknown 46.6
2407 Male, age 75, both hemispheres 46.4
2825 Male, age 18, unknown 46.3
2316 Male, age 76, right hemisphere 40.5
2273 Male, age 74, both hemispheres 34.0
Red nucleus
nTPM: 53.8
1821 Female, age 72, unknown 61.2
2503 Female, age 72, unknown 60.8
1904 Male, age 53, unknown 59.0
1954 Female, age 42, unknown 57.3
2227 Male, age 72, unknown 56.6
2823 Male, age 76, right hemisphere 55.3
2769 Male, age 72, unknown 55.1
1865 Male, age 51, unknown 51.9
2785 Male, age 18, unknown 49.8
2725 Female, age 75, unknown 47.2
2588 Male, age 74, left hemisphere 47.1
2584 Male, age 75, left hemisphere 44.1
Substantia nigra
nTPM: 52.7
1916 Female, age 42, unknown 65.4
1851 Male, age 51, unknown 57.8
2699 Male, age 18, unknown 57.7
2241 Male, age 72, unknown 57.2
1941 Male, age 53, unknown 56.5
2665 Male, age 74, both hemispheres 49.9
2409 Female, age 72, unknown 46.8
2590 Female, age 75, unknown 46.6
1889 Female, age 72, unknown 46.4
2583 Male, age 75, right hemisphere 42.9
Superior colliculus
nTPM: 47.5
2664 Male, age 75, both hemispheres 55.2
2668 Female, age 75, unknown 49.5
2587 Male, age 74, left hemisphere 48.9
2087 Female, age 72, unknown 48.5
1839 Male, age 51, unknown 48.3
1895 Male, age 76, right hemisphere 47.7
1796 Male, age 53, unknown 45.6
1913 Female, age 42, unknown 44.6
2261 Male, age 18, unknown 44.4
1995 Male, age 72, unknown 42.7
Ventral tegmental area
nTPM: 51.0
1915 Female, age 42, unknown 55.9
2410 Female, age 72, unknown 54.9
2223 Female, age 72, unknown 53.6
2218 Male, age 76, both hemispheres 53.5
1942 Male, age 51, unknown 48.0
2021 Male, age 53, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 132.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.9
Samples: 139

Max nTPM: 213.6
Min nTPM: 79.3
Std nTPM: 24.9
Median nTPM: 130.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 213.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 210.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 197.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 189.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 185.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 182.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 181.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 179.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 177.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 174.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 173.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.5
FF:10158-103A5 76 years, female 126.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 41.4
Min nTPM: 28.6
Sample A Female 41.4
Sample B Female 28.6
Sample C Male 36.8
Sample D Male 34.1
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 28.7
Min nTPM: 23.7
Sample B Female 28.7
Sample C Male 27.8
Sample D Male 23.7
Substantia nigra
nTPM: 31.4
Samples: 4

Max nTPM: 38.3
Min nTPM: 27.9
Sample A Female 38.3
Sample B Female 28.3
Sample C Male 31.1
Sample D Male 27.9
Superior colliculi
nTPM: 33.5
Samples: 4

Max nTPM: 37.2
Min nTPM: 28.4
Sample A Female 37.2
Sample B Female 28.4
Sample C Male 34.5
Sample D Male 33.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 132.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 132.7
Samples: 4

Max nTPM: 137.1
Min nTPM: 125.2
Sample A Male 137.1
Sample B Male 134.7
Sample C Female 125.2
Sample D Female 133.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
71789891 Antisense, RP_050921_03_G12, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.