BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.7 nTPM
HPA:6.7 nTPM
GTEx:3.7 nTPM
FANTOM5:47.7 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:7.3 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA066790
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.8
1781 Male, age 74, unknown 4.1
2481 Female, age 94, left hemisphere 3.6
2288 Male, age 75, left hemisphere 2.9
2289 Male, age 61, right hemisphere 2.0
2290 Female, age 72, unknown 1.1
1854 Male, age 80, left hemisphere 0.6
2846 Female, age 79, unknown 0.1
1857 Female, age 85, left hemisphere 0.0
Claustrum
nTPM: 2.8
2292 Female, age 85, both hemispheres 5.4
2491 Male, age 75, both hemispheres 3.0
2196 Female, age 79, unknown 2.9
2645 Female, age 72, unknown 2.8
2284 Female, age 91, both hemispheres 2.6
2568 Male, age 61, both hemispheres 2.5
1956 Male, age 74, unknown 2.4
2198 Male, age 80, both hemispheres 2.0
2392 Female, age 94, both hemispheres 1.4
Globus pallidus, externus
nTPM: 6.4
2567 Female, age 72, unknown 10.5
2646 Male, age 61, right hemisphere 8.4
1996 Male, age 80, right hemisphere 5.5
2772 Female, age 79, unknown 4.0
2395 Male, age 75, both hemispheres 3.8
Globus pallidus, internus
nTPM: 6.7
2111 Female, age 85, right hemisphere 9.8
2566 Female, age 72, unknown 8.6
2037 Male, age 80, right hemisphere 6.8
2778 Female, age 91, both hemispheres 6.4
2287 Male, age 75, right hemisphere 6.2
1818 Male, age 74, unknown 5.2
2483 Female, age 94, right hemisphere 3.8
Nucleus accumbens
nTPM: 1.7
2732 Male, age 80, right hemisphere 3.9
2286 Male, age 75, left hemisphere 2.5
2698 Female, age 72, unknown 2.2
2391 Female, age 94, left hemisphere 1.8
2824 Male, age 61, right hemisphere 1.2
1783 Male, age 74, unknown 1.1
1806 Female, age 85, left hemisphere 0.7
1856 Female, age 91, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 2.4
2569 Male, age 61, both hemispheres 6.0
2821 Male, age 75, both hemispheres 1.9
2484 Female, age 94, left hemisphere 1.3
2393 Male, age 80, right hemisphere 0.5
Nucleus of the diagonal band
nTPM: 0.6
1979 Male, age 74, unknown 1.7
1812 Female, age 91, both hemispheres 0.7
2029 Male, age 61, right hemisphere 0.2
2195 Female, age 85, both hemispheres 0.2
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.9
1846 Male, age 80, right hemisphere 2.1
2856 Male, age 75, right hemisphere 1.1
1998 Female, age 91, both hemispheres 0.7
2487 Female, age 94, left hemisphere 0.0
Putamen
nTPM: 1.8
2647 Male, age 75, left hemisphere 4.7
2489 Female, age 72, unknown 3.7
2482 Female, age 94, left hemisphere 2.6
1829 Male, age 74, unknown 1.2
2466 Female, age 79, unknown 0.6
1937 Female, age 91, right hemisphere 0.1
1838 Male, age 80, right hemisphere 0.0
Septal nuclei
nTPM: 1.3
2199 Male, age 80, right hemisphere 4.6
2394 Male, age 61, left hemisphere 2.3
2059 Female, age 85, both hemispheres 1.2
2009 Female, age 91, both hemispheres 1.1
2629 Female, age 94, right hemisphere 0.3
1960 Male, age 74, unknown 0.0
2031 Female, age 72, unknown 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.6
Samples: 246

Max nTPM: 6.4
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 3.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 6.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 6.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 6.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 5.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 5.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 5.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 5.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 5.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 5.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 5.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 5.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.7
Samples: 246

Max nTPM: 6.6
Min nTPM: 0.6
Std nTPM: 1.0
Median nTPM: 2.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 6.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 5.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 5.8
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 5.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 5.7
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 5.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 5.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 5.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 4.9
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 4.9
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 4.9
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Brain - Putamen (basal ganglia)
Average nTPM: 3.7
Samples: 205

Max nTPM: 7.8
Min nTPM: 0.8
Std nTPM: 1.3
Median nTPM: 3.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 7.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 7.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 6.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 6.8
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 6.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 6.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 6.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 6.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 6.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 6.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 6.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.3
FF:10164-103B2 76 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 47.7
FF:10161-103A8 76 years, female 56.7
FF:10175-103C4 60 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 17.1
FF:10037-101F1 23-56 years, mixed 17.1
Putamen
Scaled Tags Per Million: 21.7
FF:10176-103C5 60 years, female 21.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Caudate
nTPM: 7.4
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 7.7
Sample C Male 7.6
Sample D Male 8.5
Putamen
nTPM: 7.2
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.3
Sample A Female 7.7
Sample B Female 6.4
Sample C Male 6.3
Sample D Male 8.4
Septum
nTPM: 7.6
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 6.8
Sample C Male 8.5
Sample D Male 9.2
Ventral pallidum
nTPM: 7.1
Samples: 4

Max nTPM: 8.6
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 6.1
Sample C Male 8.6
Sample D Male 8.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.4
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.9
Sample A Male 2.9
Sample B Male 4.1
Sample C Female 3.0
Sample D Female 3.4
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 9.2
Sample C Female 6.4
Sample D Female 8.3
Ventral forebrain
nTPM: 5.8
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.8
Sample A Male 4.8
Sample B Male 5.5
Sample C Female 5.5
Sample D Female 7.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
69113949 Antisense, RP_050317_01_B01, Mouse strain C57BL/6J (56 days, male) 1.1
72129252 Antisense, RP_051017_03_E12, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.8
69113949 Antisense, RP_050317_01_B01, Mouse strain C57BL/6J (56 days, male) 1.0
72129252 Antisense, RP_051017_03_E12, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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