MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA:27.8 nTPM
GTEx:33.1 nTPM
FANTOM5:132.1 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:9.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
2019 Male, age 18, unknown 30.0
1870 Female, age 42, unknown 29.1
1830 Male, age 51, unknown 28.0
2411 Female, age 72, unknown 26.7
1833 Male, age 53, unknown 22.5
2828 Female, age 72, unknown 16.7
2666 Male, age 74, left hemisphere 15.6
2219 Male, age 76, both hemispheres 15.5
1827 Male, age 72, unknown 14.7
2586 Male, age 75, left hemisphere 13.5
Dorsal raphe nucleus
nTPM: 19.1
2750 Male, age 76, both hemispheres 37.1
1828 Male, age 53, unknown 16.6
2016 Female, age 72, unknown 14.9
2047 Male, age 72, unknown 14.4
2298 Female, age 72, unknown 12.4
Inferior colliculus
nTPM: 13.7
1890 Male, age 53, unknown 16.5
1848 Female, age 42, unknown 14.9
2849 Male, age 72, unknown 12.2
2097 Female, age 72, unknown 11.4
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Pedunculopontine tegmental nucleus
nTPM: 24.7
2338 Male, age 61, both hemispheres 29.9
2334 Male, age 80, both hemispheres 24.2
1921 Female, age 85, both hemispheres 19.9
Periaquaductal grey, anterior
nTPM: 12.3
2502 Female, age 75, unknown 12.9
1947 Male, age 18, unknown 12.7
1795 Male, age 51, unknown 11.4
Periaquaductal grey, dorsal
nTPM: 12.7
1831 Male, age 72, unknown 14.8
2464 Female, age 72, unknown 14.5
2850 Male, age 76, both hemispheres 12.1
1840 Male, age 53, unknown 9.3
Periaquaductal grey, lateral
nTPM: 14.0
2272 Male, age 74, both hemispheres 16.6
2053 Male, age 18, unknown 14.8
2140 Male, age 76, both hemispheres 10.8
Pretectal area
nTPM: 13.4
1815 Male, age 53, unknown 16.3
2273 Male, age 74, both hemispheres 15.9
2407 Male, age 75, both hemispheres 15.5
1817 Female, age 42, unknown 14.8
2007 Male, age 72, unknown 14.8
2316 Male, age 76, right hemisphere 14.1
2825 Male, age 18, unknown 13.1
2224 Female, age 72, unknown 11.9
2667 Female, age 75, unknown 11.5
1944 Female, age 72, unknown 10.2
1816 Male, age 51, unknown 8.8
Red nucleus
nTPM: 27.8
1865 Male, age 51, unknown 37.2
2769 Male, age 72, unknown 31.6
1821 Female, age 72, unknown 30.6
1904 Male, age 53, unknown 30.2
2227 Male, age 72, unknown 29.9
2785 Male, age 18, unknown 29.2
2588 Male, age 74, left hemisphere 27.4
2823 Male, age 76, right hemisphere 26.5
1954 Female, age 42, unknown 25.6
2503 Female, age 72, unknown 23.2
2584 Male, age 75, left hemisphere 21.8
2725 Female, age 75, unknown 19.9
Substantia nigra
nTPM: 15.9
1889 Female, age 72, unknown 18.3
2583 Male, age 75, right hemisphere 18.3
2590 Female, age 75, unknown 18.0
2409 Female, age 72, unknown 16.8
1941 Male, age 53, unknown 16.4
1851 Male, age 51, unknown 16.2
2241 Male, age 72, unknown 14.8
2665 Male, age 74, both hemispheres 14.2
1916 Female, age 42, unknown 13.1
2699 Male, age 18, unknown 12.8
Superior colliculus
nTPM: 15.7
1913 Female, age 42, unknown 22.8
2668 Female, age 75, unknown 19.4
2587 Male, age 74, left hemisphere 19.2
1839 Male, age 51, unknown 17.1
1995 Male, age 72, unknown 17.0
1895 Male, age 76, right hemisphere 13.9
1796 Male, age 53, unknown 12.7
2664 Male, age 75, both hemispheres 12.2
2087 Female, age 72, unknown 11.2
2261 Male, age 18, unknown 11.1
Ventral tegmental area
nTPM: 23.1
2223 Female, age 72, unknown 47.8
2218 Male, age 76, both hemispheres 20.9
2410 Female, age 72, unknown 19.8
2021 Male, age 53, unknown 18.5
1942 Male, age 51, unknown 17.4
1915 Female, age 42, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.1
Samples: 139

Max nTPM: 120.6
Min nTPM: 9.0
Std nTPM: 19.1
Median nTPM: 29.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 120.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 107.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 89.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 74.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 72.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 71.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 69.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 68.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 68.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 63.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.1
FF:10158-103A5 76 years, female 132.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 53.2
Min nTPM: 9.5
Sample A Female 53.2
Sample B Female 15.8
Sample C Male 10.1
Sample D Male 9.5
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 15.2
Min nTPM: 12.0
Sample B Female 15.2
Sample C Male 12.0
Sample D Male 13.1
Substantia nigra
nTPM: 17.4
Samples: 4

Max nTPM: 21.4
Min nTPM: 14.1
Sample A Female 19.4
Sample B Female 14.6
Sample C Male 14.1
Sample D Male 21.4
Superior colliculi
nTPM: 15.6
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.6
Sample A Female 18.6
Sample B Female 15.5
Sample C Male 13.6
Sample D Male 14.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.3
Sample A Male 9.3
Sample B Male 9.9
Sample C Female 9.7
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69262252 Antisense, RP_050301_01_H12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.