BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.9 nTPM
HPA:5.9 nTPM
GTEx:9.9 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:1.5 nTPM
Mouse:11.0 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.9
2846 Female, age 79, unknown 7.0
1857 Female, age 85, left hemisphere 6.5
1854 Male, age 80, left hemisphere 6.3
2288 Male, age 75, left hemisphere 6.1
1781 Male, age 74, unknown 5.8
2290 Female, age 72, unknown 5.7
2289 Male, age 61, right hemisphere 5.3
2481 Female, age 94, left hemisphere 4.5
Claustrum
nTPM: 4.2
2284 Female, age 91, both hemispheres 4.7
2491 Male, age 75, both hemispheres 4.6
2196 Female, age 79, unknown 4.4
1956 Male, age 74, unknown 4.2
2392 Female, age 94, both hemispheres 4.2
2292 Female, age 85, both hemispheres 4.0
2568 Male, age 61, both hemispheres 4.0
2645 Female, age 72, unknown 3.7
2198 Male, age 80, both hemispheres 3.6
Globus pallidus, externus
nTPM: 4.3
2395 Male, age 75, both hemispheres 4.7
2772 Female, age 79, unknown 4.5
1996 Male, age 80, right hemisphere 4.2
2646 Male, age 61, right hemisphere 4.1
2567 Female, age 72, unknown 3.7
Globus pallidus, internus
nTPM: 4.5
2483 Female, age 94, right hemisphere 5.9
2287 Male, age 75, right hemisphere 5.5
2566 Female, age 72, unknown 4.4
2037 Male, age 80, right hemisphere 4.0
2778 Female, age 91, both hemispheres 4.0
1818 Male, age 74, unknown 3.7
2111 Female, age 85, right hemisphere 3.6
Nucleus accumbens
nTPM: 5.7
2824 Male, age 61, right hemisphere 7.3
1856 Female, age 91, right hemisphere 6.6
1783 Male, age 74, unknown 6.4
1806 Female, age 85, left hemisphere 5.8
2698 Female, age 72, unknown 5.6
2286 Male, age 75, left hemisphere 4.7
2391 Female, age 94, left hemisphere 4.6
2732 Male, age 80, right hemisphere 4.4
Nucleus basalis of Meynert
nTPM: 4.9
2393 Male, age 80, right hemisphere 6.3
2484 Female, age 94, left hemisphere 5.6
2821 Male, age 75, both hemispheres 4.4
2569 Male, age 61, both hemispheres 3.4
Nucleus of the diagonal band
nTPM: 5.0
1979 Male, age 74, unknown 5.5
1812 Female, age 91, both hemispheres 5.2
2029 Male, age 61, right hemisphere 5.0
2775 Male, age 80, right hemisphere 5.0
2195 Female, age 85, both hemispheres 4.3
Olfactory tubercle
nTPM: 4.9
1998 Female, age 91, both hemispheres 5.5
2487 Female, age 94, left hemisphere 4.9
1846 Male, age 80, right hemisphere 4.7
2856 Male, age 75, right hemisphere 4.5
Putamen
nTPM: 5.9
1838 Male, age 80, right hemisphere 7.6
2466 Female, age 79, unknown 6.7
1937 Female, age 91, right hemisphere 6.6
1829 Male, age 74, unknown 6.1
2489 Female, age 72, unknown 5.1
2647 Male, age 75, left hemisphere 4.8
2482 Female, age 94, left hemisphere 4.5
Septal nuclei
nTPM: 4.7
2031 Female, age 72, unknown 5.7
2009 Female, age 91, both hemispheres 5.1
2394 Male, age 61, left hemisphere 5.1
2629 Female, age 94, right hemisphere 4.9
2199 Male, age 80, right hemisphere 4.6
1960 Male, age 74, unknown 4.0
2059 Female, age 85, both hemispheres 3.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.5
Samples: 246

Max nTPM: 22.8
Min nTPM: 1.8
Std nTPM: 4.3
Median nTPM: 7.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 22.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 19.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 19.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 18.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 18.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 18.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 18.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 18.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 17.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 17.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 17.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.9
Samples: 246

Max nTPM: 23.1
Min nTPM: 2.4
Std nTPM: 4.2
Median nTPM: 9.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 23.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 20.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 19.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 19.3
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 18.8
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 18.6
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 18.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 18.5
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 18.3
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 18.1
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 17.4
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Brain - Putamen (basal ganglia)
Average nTPM: 8.7
Samples: 205

Max nTPM: 26.3
Min nTPM: 2.1
Std nTPM: 4.5
Median nTPM: 7.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 26.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 25.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 23.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 21.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 20.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 20.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 19.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 18.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 18.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 18.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 17.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.6
FF:10164-103B2 76 years, female 13.6
Globus pallidus
Scaled Tags Per Million: 8.7
FF:10175-103C4 60 years, female 14.2
FF:10161-103A8 76 years, female 3.2
Nucleus accumbens
Scaled Tags Per Million: 13.8
FF:10037-101F1 23-56 years, mixed 13.8
Putamen
Scaled Tags Per Million: 18.7
FF:10176-103C5 60 years, female 18.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.5
Pig sample Sample description nTPM
Caudate
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 0.8
Sample C Male 1.2
Sample D Male 0.9
Putamen
nTPM: 1.1
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.0
Sample C Male 2.0
Sample D Male 0.9
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.2
Sample A Female 1.1
Sample B Female 0.9
Sample C Male 0.9
Sample D Male 0.2
Ventral pallidum
nTPM: 1.5
Samples: 4

Max nTPM: 3.3
Min nTPM: 0.6
Sample A Female 1.1
Sample B Female 1.1
Sample C Male 3.3
Sample D Male 0.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.4
Samples: 4

Max nTPM: 8.1
Min nTPM: 2.8
Sample A Male 2.8
Sample B Male 2.8
Sample C Female 8.1
Sample D Female 7.7
Septum
nTPM: 3.5
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.6
Sample A Male 3.4
Sample B Male 4.4
Sample C Female 3.6
Sample D Female 2.6
Ventral forebrain
nTPM: 11.0
Samples: 4

Max nTPM: 14.8
Min nTPM: 6.0
Sample A Male 14.8
Sample B Male 6.0
Sample C Female 10.4
Sample D Female 12.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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