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TRAJ49
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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:406.5 nTPM
GTEx:406.5 nTPM
FANTOM5:78.6 Scaled Tags Per Million

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 406.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 406.5
Samples: 105

Max nTPM: 720.8
Min nTPM: 163.7
Std nTPM: 125.4
Median nTPM:
246_1 77 years, male 720.8
229_1 69 years, female 715.9
396_1 62 years, male 659.5
447_1 81 years, male 652.4
347_1 72 years, male 645.6
35_1 74 years, female 637.6
322_1 76 years, male 632.4
218_1 71 years, female 629.3
526_1 61 years, male 625.5
81_1 67 years, male 623.0
355_1 70 years, female 614.3
354_1 81 years, female 604.2
163_1 78 years, male 580.7
115_1 83 years, male 579.7
311_1 78 years, male 554.6
6_1 73 years, female 545.2
384_1 83 years, male 543.3
316_1 62 years, male 521.9
389_1 86 years, female 512.9
2_1 77 years, female 496.9
265_1 87 years, male 494.3
405_1 91 years, male 492.1
307_1 66 years, female 490.4
468_1 89 years, male 487.2
320_1 89 years, female 487.1
243_1 75 years, male 477.3
321_1 62 years, female 472.4
353_1 82 years, female 468.1
319_1 81 years, male 465.8
375_1 74 years, female 460.7
41_1 94 years, female 455.1
480_1 63 years, male 451.0
172_1 72 years, female 449.9
466_1 57 years, female 448.4
386_1 76 years, male 446.1
356_1 87 years, female 443.5
17_1 71 years, male 436.8
377_1 82 years, female 435.9
415_1 77 years, female 435.4
425_1 59 years, female 434.6
313_1 79 years, female 432.3
177_1 74 years, male 431.3
503_1 68 years, male 431.3
348_1 84 years, male 426.6
217_1 76 years, male 422.8
495_1 57 years, female 417.4
237_1 82 years, male 410.2
18_1 88 years, male 410.0
499_1 55 years, female 409.9
117_1 61 years, male 408.4
153_1 70 years, female 406.2
251_1 78 years, male 395.2
292_1 71 years, male 390.7
318_1 68 years, male 389.6
351_1 91 years, male 381.0
349_1 83 years, male 380.4
350_1 84 years, female 378.3
266_1 85 years, male 376.2
324_1 76 years, male 376.1
162_1 79 years, female 375.5
414_1 84 years, female 371.8
315_1 62 years, female 366.6
379_1 60 years, male 366.0
139_1 64 years, female 362.6
490_1 67 years, female 362.6
517_1 88 years, male 362.0
376_1 75 years, female 358.8
89_1 63 years, male 358.6
291_1 76 years, male 356.4
491_1 89 years, female 349.4
335_1 73 years, female 348.4
126_1 63 years, male 346.6
109_1 81 years, female 346.3
394_1 75 years, female 343.8
9_1 66 years, female 337.9
142_1 61 years, female 336.0
99_1 64 years, male 333.3
293_1 68 years, female 331.2
42_1 85 years, male 329.4
286_1 68 years, female 329.4
404_1 82 years, female 321.8
254_1 77 years, female 320.8
406_1 79 years, male 318.8
145_1 84 years, male 308.7
352_1 62 years, male 305.0
413_1 59 years, female 300.7
264_1 73 years, female 286.3
189_1 76 years, male 283.3
518_1 75 years, female 277.9
314_1 67 years, male 275.7
32_1 67 years, male 275.5
149_1 88 years, male 251.4
173_1 67 years, male 246.4
137_1 83 years, male 243.6
43_1 64 years, female 235.2
120_1 70 years, female 232.8
317_1 60 years, male 231.9
4_1 88 years, female 231.3
288_1 66 years, female 224.1
295_1 61 years, female 206.1
452_1 88 years, female 196.9
308_1 70 years, female 196.8
119_1 70 years, female 190.2
506_1 65 years, male 181.4
501_1 88 years, male 163.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 78.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 78.6
FF:10030-101E3 24-65 years, mixed 78.6

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