BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:0.4 nTPM
HPA:0.4 nTPM
GTEx:0.3 nTPM
FANTOM5:1.5 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.1
2846 Female, age 79, unknown 0.4
1781 Male, age 74, unknown 0.1
1854 Male, age 80, left hemisphere 0.1
1857 Female, age 85, left hemisphere 0.1
2288 Male, age 75, left hemisphere 0.1
2289 Male, age 61, right hemisphere 0.1
2290 Female, age 72, unknown 0.1
2481 Female, age 94, left hemisphere 0.1
Claustrum
nTPM: 0.1
2196 Female, age 79, unknown 0.3
2292 Female, age 85, both hemispheres 0.2
1956 Male, age 74, unknown 0.1
2198 Male, age 80, both hemispheres 0.1
2284 Female, age 91, both hemispheres 0.1
2392 Female, age 94, both hemispheres 0.1
2491 Male, age 75, both hemispheres 0.1
2568 Male, age 61, both hemispheres 0.1
2645 Female, age 72, unknown 0.1
Globus pallidus, externus
nTPM: 0.4
2395 Male, age 75, both hemispheres 1.4
2772 Female, age 79, unknown 0.3
2646 Male, age 61, right hemisphere 0.2
1996 Male, age 80, right hemisphere 0.1
2567 Female, age 72, unknown 0.1
Globus pallidus, internus
nTPM: 0.1
1818 Male, age 74, unknown 0.1
2037 Male, age 80, right hemisphere 0.1
2111 Female, age 85, right hemisphere 0.1
2287 Male, age 75, right hemisphere 0.1
2483 Female, age 94, right hemisphere 0.1
2566 Female, age 72, unknown 0.1
2778 Female, age 91, both hemispheres 0.1
Nucleus accumbens
nTPM: 0.1
1783 Male, age 74, unknown 0.1
1806 Female, age 85, left hemisphere 0.1
1856 Female, age 91, right hemisphere 0.1
2286 Male, age 75, left hemisphere 0.1
2391 Female, age 94, left hemisphere 0.1
2698 Female, age 72, unknown 0.1
2732 Male, age 80, right hemisphere 0.1
2824 Male, age 61, right hemisphere 0.1
Nucleus basalis of Meynert
nTPM: 0.3
2821 Male, age 75, both hemispheres 1.1
2393 Male, age 80, right hemisphere 0.1
2484 Female, age 94, left hemisphere 0.1
2569 Male, age 61, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.1
2029 Male, age 61, right hemisphere 0.2
1812 Female, age 91, both hemispheres 0.1
1979 Male, age 74, unknown 0.1
2195 Female, age 85, both hemispheres 0.1
2775 Male, age 80, right hemisphere 0.1
Olfactory tubercle
nTPM: 0.2
1846 Male, age 80, right hemisphere 0.7
1998 Female, age 91, both hemispheres 0.1
2487 Female, age 94, left hemisphere 0.1
2856 Male, age 75, right hemisphere 0.1
Putamen
nTPM: 0.1
2466 Female, age 79, unknown 0.3
1829 Male, age 74, unknown 0.1
1838 Male, age 80, right hemisphere 0.1
1937 Female, age 91, right hemisphere 0.1
2482 Female, age 94, left hemisphere 0.1
2489 Female, age 72, unknown 0.1
2647 Male, age 75, left hemisphere 0.1
Septal nuclei
nTPM: 0.2
2199 Male, age 80, right hemisphere 0.7
2031 Female, age 72, unknown 0.2
1960 Male, age 74, unknown 0.1
2009 Female, age 91, both hemispheres 0.1
2059 Female, age 85, both hemispheres 0.1
2394 Male, age 61, left hemisphere 0.1
2629 Female, age 94, right hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 6.1
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM:
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 6.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 3.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 3.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.3
Samples: 246

Max nTPM: 43.4
Min nTPM: 0.0
Std nTPM: 2.7
Median nTPM:
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 43.4
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 5.4
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 1.8
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 1.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 1.7
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 1.5
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 1.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 1.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 1.3
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 1.0
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 0.9
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Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 15.1
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 0.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 15.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 6.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 5.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 2.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 1.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 1.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.7
FF:10175-103C4 60 years, female 1.5
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 1.5
FF:10037-101F1 23-56 years, mixed 1.5
Putamen
Scaled Tags Per Million: 0.4
FF:10176-103C5 60 years, female 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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