HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:66.2 nTPM
HPA:66.2 nTPM
GTEx:43.9 nTPM
FANTOM5:171.5 Scaled Tags Per Million
Pig:192.7 nTPM
Mouse:394.6 nTPM
Allen mouse:15.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000540
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 66.2
Sample id Sample description nTPM
Hippocampus
nTPM: 36.9
1898 Male, age 80, left hemisphere 53.3
1855 Male, age 76, left hemisphere 44.6
2621 Female, age 67, right hemisphere 41.5
2148 Female, age 91, left hemisphere 32.2
1911 Female, age 85, right hemisphere 26.0
2529 Female, age 94, left hemisphere 23.7
Dentate gyrus
nTPM: 41.5
1927 Female, age 91, both hemispheres 61.3
2010 Male, age 76, both hemispheres 47.5
2530 Female, age 94, left hemisphere 42.1
2246 Female, age 85, both hemispheres 35.2
2528 Male, age 74, both hemispheres 31.7
2531 Female, age 67, both hemispheres 31.5
Entorhinal gyrus
nTPM: 44.2
2613 Female, age 94, left hemisphere 60.0
2764 Male, age 80, right hemisphere 55.2
1938 Female, age 85, left hemisphere 52.1
1787 Male, age 76, left hemisphere 42.1
2686 Male, age 75, right hemisphere 33.4
2117 Female, age 91, right hemisphere 22.7
Hippocampus, CA1
nTPM: 45.2
2749 Male, age 80, left hemisphere 74.5
2045 Male, age 76, both hemispheres 47.3
1873 Female, age 85, both hemispheres 46.3
2527 Male, age 74, both hemispheres 30.2
2082 Female, age 91, right hemisphere 27.8
Hippocampus, CA2
nTPM: 40.5
1892 Male, age 76, both hemispheres 61.5
1963 Male, age 80, left hemisphere 54.6
2437 Female, age 94, left hemisphere 38.5
1940 Female, age 85, left hemisphere 32.0
2249 Male, age 74, both hemispheres 29.6
2113 Female, age 91, right hemisphere 27.1
Hippocampus, CA3
nTPM: 39.7
2137 Male, age 80, left hemisphere 53.1
1867 Male, age 76, both hemispheres 48.1
2620 Female, age 94, left hemisphere 45.2
1891 Female, age 85, both hemispheres 31.3
2861 Female, age 67, both hemispheres 30.4
2436 Male, age 74, both hemispheres 30.0
Parahippocampal cortex
nTPM: 47.3
1850 Male, age 80, both hemispheres 66.7
1990 Female, age 91, right hemisphere 53.3
2693 Female, age 94, both hemispheres 52.7
2245 Female, age 91, both hemispheres 52.1
1933 Female, age 85, both hemispheres 49.8
2250 Female, age 67, right hemisphere 48.6
2532 Female, age 72, left hemisphere 47.7
2018 Male, age 76, both hemispheres 37.2
2622 Female, age 67, right hemisphere 35.6
2692 Male, age 74, both hemispheres 29.6
Perirhinal gyrus
nTPM: 66.2
1847 Female, age 91, left hemisphere 84.5
2521 Female, age 94, right hemisphere 68.9
1794 Male, age 80, right hemisphere 63.9
1841 Female, age 85, right hemisphere 63.1
2848 Male, age 76, right hemisphere 50.6
Subiculum
nTPM: 32.6
1977 Female, age 85, both hemispheres 44.8
1901 Male, age 80, both hemispheres 38.1
2438 Female, age 94, left hemisphere 33.8
2619 Male, age 74, both hemispheres 29.5
2042 Male, age 76, both hemispheres 25.7
2729 Female, age 91, right hemisphere 23.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.9
Samples: 197

Max nTPM: 158.5
Min nTPM: 6.1
Std nTPM: 28.3
Median nTPM: 39.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 158.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 117.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 115.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 106.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 103.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 101.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 99.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 97.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 96.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 94.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 93.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 171.5
FF:10169-103B7 60 years, female 234.3
FF:10153-102I9 76 years, female 108.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 192.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 183.2
Samples: 4

Max nTPM: 241.3
Min nTPM: 137.8
Sample A Female 241.3
Sample B Female 184.7
Sample C Male 168.8
Sample D Male 137.8
Entorhinal cortex
nTPM: 187.9
Samples: 4

Max nTPM: 204.4
Min nTPM: 178.1
Sample A Female 204.4
Sample B Female 188.5
Sample C Male 178.1
Sample D Male 180.4
Subiculum
nTPM: 192.8
Samples: 4

Max nTPM: 250.8
Min nTPM: 171.6
Sample A Female 250.8
Sample B Female 171.6
Sample C Male 174.1
Sample D Male 174.5
Ventral hippocampus
nTPM: 176.3
Samples: 4

Max nTPM: 222.9
Min nTPM: 127.8
Sample A Female 222.9
Sample B Female 127.8
Sample C Male 200.0
Sample D Male 154.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 394.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 377.6
Samples: 4

Max nTPM: 397.8
Min nTPM: 334.1
Sample A Male 334.1
Sample B Male 384.2
Sample C Female 394.4
Sample D Female 397.8
Hippocampal formation
nTPM: 394.6
Samples: 4

Max nTPM: 461.7
Min nTPM: 365.2
Sample A Male 461.7
Sample B Male 380.8
Sample C Female 365.2
Sample D Female 370.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.7
77454654 Antisense, RP_070129_01_B11, Mouse strain C57BL/6J (56 days, male) 20.9
89 Antisense, RP_040324_01_E06, Mouse strain C57BL/6J (56 days, male) 10.6
90 Antisense, RP_040324_01_E06, Mouse strain C57BL/6J (56 days, male) 5.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.