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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:104.8 nTPM
HPA:104.8 nTPM
GTEx:135.9 nTPM
FANTOM5:170.6 Scaled Tags Per Million
Pig:97.2 nTPM
Mouse:441.0 nTPM
Allen mouse:23.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 104.8
Sample id Sample description nTPM
Amygdala
nTPM: 97.9
2814 Male, age 76, right hemisphere 112.2
1987 Female, age 91, left hemisphere 101.2
2514 Male, age 75, right hemisphere 95.9
2517 Female, age 94, left hemisphere 91.9
2695 Female, age 67, right hemisphere 88.4
Basal amygdala
nTPM: 94.7
2243 Female, age 91, right hemisphere 108.9
2110 Male, age 80, left hemisphere 102.5
2685 Female, age 94, left hemisphere 96.5
1955 Male, age 76, both hemispheres 96.4
2609 Male, age 75, right hemisphere 93.5
2827 Female, age 67, right hemisphere 70.2
Central amygdala
nTPM: 94.1
1905 Male, age 76, both hemispheres 105.1
2239 Male, age 80, left hemisphere 95.6
2515 Male, age 75, right hemisphere 90.6
2826 Female, age 94, left hemisphere 90.1
2701 Female, age 91, right hemisphere 88.9
Corticomedial amygdala
nTPM: 96.9
2829 Male, age 80, left hemisphere 109.5
2242 Female, age 91, right hemisphere 108.0
2429 Female, age 94, left hemisphere 97.3
2240 Male, age 76, both hemispheres 96.9
2428 Male, age 75, right hemisphere 94.4
2535 Female, age 67, right hemisphere 75.0
Lateral amygdala
nTPM: 89.4
1883 Male, age 76, both hemispheres 114.6
2534 Female, age 94, left hemisphere 94.5
2516 Male, age 75, right hemisphere 90.6
2255 Female, age 91, right hemisphere 84.2
2256 Male, age 80, left hemisphere 83.5
2830 Female, age 67, right hemisphere 69.2
Stria terminalis, bed nucleus
nTPM: 104.8
1974 Female, age 91, both hemispheres 120.1
2486 Female, age 94, both hemispheres 102.1
2201 Male, age 74, unknown 92.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 135.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 135.9
Samples: 152

Max nTPM: 264.6
Min nTPM: 60.3
Std nTPM: 42.7
Median nTPM: 132.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 264.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 236.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 235.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 230.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 224.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 223.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 221.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 217.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 213.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 211.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 203.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 201.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 198.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 198.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 196.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 192.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 192.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 191.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 188.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 184.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 184.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 182.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 182.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 181.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 180.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 179.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 179.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 176.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 174.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 170.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 168.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 168.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 168.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 164.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 164.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 163.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 162.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 162.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 162.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 162.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 161.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 160.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 158.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 158.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 157.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 156.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 155.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 155.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 155.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 154.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 153.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 153.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 153.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 152.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 151.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 151.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 150.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 150.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 150.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 149.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 149.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 147.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 144.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 144.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 143.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 142.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 140.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 139.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 139.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 136.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 136.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 134.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 133.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 132.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 132.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 132.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 131.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 130.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 129.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 129.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 128.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 128.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 126.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 126.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 125.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 124.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 124.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 122.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 120.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 119.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 118.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 116.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 115.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 114.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 113.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 112.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 112.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 111.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 110.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 108.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 108.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 107.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 107.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 106.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 105.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 105.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 103.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 103.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 103.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 101.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 100.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 99.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 99.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 97.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 97.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 95.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 93.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 92.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 92.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 92.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 92.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 90.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 90.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 88.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 87.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 87.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 86.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 85.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 83.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 82.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 80.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 80.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 80.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 80.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 75.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 73.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 73.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 68.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 67.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 65.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 65.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 60.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 170.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 170.6
FF:10151-102I7 76 years, female 170.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 97.2
Pig sample Sample description nTPM
Amygdala
nTPM: 97.2
Samples: 4

Max nTPM: 135.4
Min nTPM: 77.9
Sample A Female 135.4
Sample B Female 78.3
Sample C Male 77.9
Sample D Male 97.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 441.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 441.0
Samples: 4

Max nTPM: 479.8
Min nTPM: 422.1
Sample A Male 479.8
Sample B Male 433.4
Sample C Female 422.1
Sample D Female 428.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.5
70918898 Antisense, RP_050712_04_G03, Mouse strain C57BL/6J (56 days, male) 26.2
70194916 Antisense, RP_050517_02_A06, Mouse strain C57BL/6J (56 days, male) 24.0
74957912 Antisense, RP_060315_05_A09, Mouse strain C57BL/6J (56 days, male) 20.4

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