BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:33.4 nTPM
HPA:33.4 nTPM
GTEx:11.7 nTPM
FANTOM5:18.8 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:11.0 nTPM
Allen mouse:3.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035437
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.1
1781 Male, age 74, unknown 33.9
2481 Female, age 94, left hemisphere 32.7
2288 Male, age 75, left hemisphere 31.7
2289 Male, age 61, right hemisphere 30.9
1854 Male, age 80, left hemisphere 30.2
2290 Female, age 72, unknown 30.0
1857 Female, age 85, left hemisphere 29.7
2846 Female, age 79, unknown 29.7
Claustrum
nTPM: 30.9
1956 Male, age 74, unknown 32.0
2491 Male, age 75, both hemispheres 31.6
2196 Female, age 79, unknown 31.2
2198 Male, age 80, both hemispheres 31.1
2284 Female, age 91, both hemispheres 30.9
2292 Female, age 85, both hemispheres 30.8
2392 Female, age 94, both hemispheres 30.5
2645 Female, age 72, unknown 30.4
2568 Male, age 61, both hemispheres 29.3
Globus pallidus, externus
nTPM: 31.7
2772 Female, age 79, unknown 33.0
1996 Male, age 80, right hemisphere 32.2
2395 Male, age 75, both hemispheres 31.2
2567 Female, age 72, unknown 31.1
2646 Male, age 61, right hemisphere 30.8
Globus pallidus, internus
nTPM: 32.9
2778 Female, age 91, both hemispheres 34.2
1818 Male, age 74, unknown 33.2
2566 Female, age 72, unknown 33.0
2287 Male, age 75, right hemisphere 32.9
2483 Female, age 94, right hemisphere 32.8
2037 Male, age 80, right hemisphere 32.4
2111 Female, age 85, right hemisphere 31.6
Nucleus accumbens
nTPM: 30.4
2286 Male, age 75, left hemisphere 32.5
2732 Male, age 80, right hemisphere 31.5
1783 Male, age 74, unknown 30.8
2391 Female, age 94, left hemisphere 30.6
2698 Female, age 72, unknown 30.4
1806 Female, age 85, left hemisphere 29.4
1856 Female, age 91, right hemisphere 29.0
2824 Male, age 61, right hemisphere 28.7
Nucleus basalis of Meynert
nTPM: 30.8
2484 Female, age 94, left hemisphere 32.2
2569 Male, age 61, both hemispheres 31.5
2821 Male, age 75, both hemispheres 30.4
2393 Male, age 80, right hemisphere 29.0
Nucleus of the diagonal band
nTPM: 33.4
2775 Male, age 80, right hemisphere 35.1
1812 Female, age 91, both hemispheres 33.9
2195 Female, age 85, both hemispheres 33.7
1979 Male, age 74, unknown 32.2
2029 Male, age 61, right hemisphere 32.2
Olfactory tubercle
nTPM: 32.2
1998 Female, age 91, both hemispheres 33.2
1846 Male, age 80, right hemisphere 32.4
2856 Male, age 75, right hemisphere 31.7
2487 Female, age 94, left hemisphere 31.4
Putamen
nTPM: 30.5
2482 Female, age 94, left hemisphere 32.6
1937 Female, age 91, right hemisphere 31.2
2647 Male, age 75, left hemisphere 31.0
2489 Female, age 72, unknown 30.8
2466 Female, age 79, unknown 30.1
1829 Male, age 74, unknown 29.1
1838 Male, age 80, right hemisphere 28.7
Septal nuclei
nTPM: 32.3
2031 Female, age 72, unknown 34.2
1960 Male, age 74, unknown 33.9
2059 Female, age 85, both hemispheres 33.3
2009 Female, age 91, both hemispheres 32.5
2629 Female, age 94, right hemisphere 31.0
2394 Male, age 61, left hemisphere 30.7
2199 Male, age 80, right hemisphere 30.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.0
Samples: 246

Max nTPM: 54.1
Min nTPM: 2.3
Std nTPM: 5.8
Median nTPM: 8.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 54.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 36.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 31.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 29.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 26.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 24.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 23.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 23.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 22.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 21.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 21.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 76.3
Min nTPM: 1.2
Std nTPM: 8.0
Median nTPM: 8.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 76.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 42.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 37.8
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 36.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 34.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 34.0
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 30.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 29.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 28.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 28.1
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 27.8
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Brain - Putamen (basal ganglia)
Average nTPM: 11.7
Samples: 205

Max nTPM: 31.1
Min nTPM: 0.0
Std nTPM: 5.6
Median nTPM: 10.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 31.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 30.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 28.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 28.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 27.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 26.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 25.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 23.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 23.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 22.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 20.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.2
FF:10164-103B2 76 years, female 10.2
Globus pallidus
Scaled Tags Per Million: 18.8
FF:10175-103C4 60 years, female 25.2
FF:10161-103A8 76 years, female 12.4
Nucleus accumbens
Scaled Tags Per Million: 17.8
FF:10037-101F1 23-56 years, mixed 17.8
Putamen
Scaled Tags Per Million: 14.7
FF:10176-103C5 60 years, female 14.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Caudate
nTPM: 2.6
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.4
Sample A Female 2.6
Sample B Female 2.8
Sample C Male 2.5
Sample D Male 2.4
Putamen
nTPM: 4.2
Samples: 4

Max nTPM: 6.0
Min nTPM: 2.8
Sample A Female 6.0
Sample B Female 2.8
Sample C Male 4.0
Sample D Male 4.1
Septum
nTPM: 4.1
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.3
Sample A Female 4.2
Sample B Female 3.3
Sample C Male 4.7
Sample D Male 4.3
Ventral pallidum
nTPM: 4.0
Samples: 4

Max nTPM: 5.7
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 4.0
Sample C Male 5.7
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.2
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.7
Sample A Male 9.0
Sample B Male 12.7
Sample C Female 8.7
Sample D Female 10.3
Septum
nTPM: 7.8
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.8
Sample A Male 8.1
Sample B Male 7.3
Sample C Female 8.9
Sample D Female 6.8
Ventral forebrain
nTPM: 11.0
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.3
Sample A Male 12.9
Sample B Male 10.2
Sample C Female 9.3
Sample D Female 11.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
68302323 Antisense, RP_041130_02_F05, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 3.0
68302323 Antisense, RP_041130_02_F05, Mouse strain C57BL/6J (56 days, male) 3.0

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