MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:154.5 nTPM
FANTOM5:75.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2219 Male, age 76, both hemispheres 41.1
1833 Male, age 53, unknown 40.2
1827 Male, age 72, unknown 39.5
2019 Male, age 18, unknown 39.3
2828 Female, age 72, unknown 39.3
2586 Male, age 75, left hemisphere 39.0
1870 Female, age 42, unknown 37.2
2411 Female, age 72, unknown 37.1
2666 Male, age 74, left hemisphere 35.5
1830 Male, age 51, unknown 34.0
Dorsal raphe nucleus
nTPM: 37.7
2298 Female, age 72, unknown 45.4
1828 Male, age 53, unknown 39.8
2750 Male, age 76, both hemispheres 37.3
2047 Male, age 72, unknown 33.6
2016 Female, age 72, unknown 32.4
Inferior colliculus
nTPM: 37.9
2097 Female, age 72, unknown 38.6
2849 Male, age 72, unknown 38.0
1848 Female, age 42, unknown 37.5
1890 Male, age 53, unknown 37.3
Median raphe nucleus
nTPM: 38.9
2220 Male, age 76, midline 38.9
Pedunculopontine tegmental nucleus
nTPM: 40.8
1921 Female, age 85, both hemispheres 49.9
2334 Male, age 80, both hemispheres 44.8
2338 Male, age 61, both hemispheres 27.8
Periaquaductal grey, anterior
nTPM: 39.4
1795 Male, age 51, unknown 43.3
2502 Female, age 75, unknown 39.3
1947 Male, age 18, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 36.2
2464 Female, age 72, unknown 42.4
2850 Male, age 76, both hemispheres 37.2
1831 Male, age 72, unknown 34.9
1840 Male, age 53, unknown 30.1
Periaquaductal grey, lateral
nTPM: 33.2
2272 Male, age 74, both hemispheres 35.1
2053 Male, age 18, unknown 33.0
2140 Male, age 76, both hemispheres 31.5
Pretectal area
nTPM: 43.7
1816 Male, age 51, unknown 59.3
1815 Male, age 53, unknown 51.6
1817 Female, age 42, unknown 51.1
2007 Male, age 72, unknown 49.3
1944 Female, age 72, unknown 46.6
2667 Female, age 75, unknown 43.6
2224 Female, age 72, unknown 42.8
2825 Male, age 18, unknown 41.3
2407 Male, age 75, both hemispheres 34.4
2316 Male, age 76, right hemisphere 31.2
2273 Male, age 74, both hemispheres 29.1
Red nucleus
nTPM: 36.2
1821 Female, age 72, unknown 45.8
2725 Female, age 75, unknown 40.0
2785 Male, age 18, unknown 38.8
1865 Male, age 51, unknown 38.3
2503 Female, age 72, unknown 37.1
1954 Female, age 42, unknown 36.0
2823 Male, age 76, right hemisphere 35.5
2227 Male, age 72, unknown 33.8
2588 Male, age 74, left hemisphere 33.5
1904 Male, age 53, unknown 33.3
2769 Male, age 72, unknown 32.1
2584 Male, age 75, left hemisphere 29.7
Substantia nigra
nTPM: 42.1
2241 Male, age 72, unknown 58.9
1941 Male, age 53, unknown 47.4
1889 Female, age 72, unknown 42.2
2665 Male, age 74, both hemispheres 41.2
2583 Male, age 75, right hemisphere 39.9
1916 Female, age 42, unknown 39.7
2699 Male, age 18, unknown 39.1
1851 Male, age 51, unknown 38.3
2409 Female, age 72, unknown 38.0
2590 Female, age 75, unknown 36.2
Superior colliculus
nTPM: 38.9
2587 Male, age 74, left hemisphere 46.3
2087 Female, age 72, unknown 45.6
2261 Male, age 18, unknown 40.9
1796 Male, age 53, unknown 39.5
2664 Male, age 75, both hemispheres 38.0
2668 Female, age 75, unknown 37.7
1895 Male, age 76, right hemisphere 37.1
1913 Female, age 42, unknown 36.2
1839 Male, age 51, unknown 34.3
1995 Male, age 72, unknown 33.0
Ventral tegmental area
nTPM: 35.0
2218 Male, age 76, both hemispheres 39.0
2223 Female, age 72, unknown 37.4
1915 Female, age 42, unknown 36.7
2410 Female, age 72, unknown 35.3
1942 Male, age 51, unknown 30.9
2021 Male, age 53, unknown 30.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 154.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 154.5
Samples: 139

Max nTPM: 623.9
Min nTPM: 53.1
Std nTPM: 73.0
Median nTPM: 138.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 623.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 433.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 339.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 310.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 306.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 301.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 295.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 275.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 267.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 249.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 244.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.9
FF:10158-103A5 76 years, female 75.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.