BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:72.6 nTPM
FANTOM5:35.9 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA050406
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.7
2846 Female, age 79, unknown 20.7
2481 Female, age 94, left hemisphere 20.3
1781 Male, age 74, unknown 19.5
1854 Male, age 80, left hemisphere 18.9
2289 Male, age 61, right hemisphere 18.2
2288 Male, age 75, left hemisphere 17.8
1857 Female, age 85, left hemisphere 17.7
2290 Female, age 72, unknown 16.8
Claustrum
nTPM: 17.6
2645 Female, age 72, unknown 19.9
2198 Male, age 80, both hemispheres 18.1
2292 Female, age 85, both hemispheres 17.8
2491 Male, age 75, both hemispheres 17.8
1956 Male, age 74, unknown 17.4
2284 Female, age 91, both hemispheres 17.4
2568 Male, age 61, both hemispheres 17.2
2196 Female, age 79, unknown 16.5
2392 Female, age 94, both hemispheres 16.5
Globus pallidus, externus
nTPM: 19.2
2772 Female, age 79, unknown 22.1
1996 Male, age 80, right hemisphere 19.5
2567 Female, age 72, unknown 18.9
2646 Male, age 61, right hemisphere 18.3
2395 Male, age 75, both hemispheres 17.0
Globus pallidus, internus
nTPM: 19.0
2287 Male, age 75, right hemisphere 21.9
2037 Male, age 80, right hemisphere 20.0
2483 Female, age 94, right hemisphere 20.0
2566 Female, age 72, unknown 18.4
2778 Female, age 91, both hemispheres 18.4
1818 Male, age 74, unknown 17.6
2111 Female, age 85, right hemisphere 17.0
Nucleus accumbens
nTPM: 19.1
1783 Male, age 74, unknown 20.6
1856 Female, age 91, right hemisphere 20.5
2286 Male, age 75, left hemisphere 19.8
1806 Female, age 85, left hemisphere 19.6
2824 Male, age 61, right hemisphere 19.2
2732 Male, age 80, right hemisphere 18.3
2698 Female, age 72, unknown 17.8
2391 Female, age 94, left hemisphere 16.8
Nucleus basalis of Meynert
nTPM: 17.3
2484 Female, age 94, left hemisphere 18.4
2569 Male, age 61, both hemispheres 17.4
2393 Male, age 80, right hemisphere 17.2
2821 Male, age 75, both hemispheres 16.0
Nucleus of the diagonal band
nTPM: 18.4
1812 Female, age 91, both hemispheres 19.1
2775 Male, age 80, right hemisphere 19.1
1979 Male, age 74, unknown 18.2
2195 Female, age 85, both hemispheres 18.2
2029 Male, age 61, right hemisphere 17.3
Olfactory tubercle
nTPM: 18.4
1998 Female, age 91, both hemispheres 19.0
2487 Female, age 94, left hemisphere 18.4
1846 Male, age 80, right hemisphere 18.3
2856 Male, age 75, right hemisphere 17.8
Putamen
nTPM: 18.6
2466 Female, age 79, unknown 19.9
1838 Male, age 80, right hemisphere 19.8
2647 Male, age 75, left hemisphere 18.8
2482 Female, age 94, left hemisphere 18.3
1937 Female, age 91, right hemisphere 18.0
2489 Female, age 72, unknown 18.0
1829 Male, age 74, unknown 17.7
Septal nuclei
nTPM: 18.2
1960 Male, age 74, unknown 20.9
2394 Male, age 61, left hemisphere 19.5
2059 Female, age 85, both hemispheres 17.8
2199 Male, age 80, right hemisphere 17.6
2009 Female, age 91, both hemispheres 17.2
2629 Female, age 94, right hemisphere 17.2
2031 Female, age 72, unknown 17.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 72.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 61.8
Samples: 246

Max nTPM: 180.7
Min nTPM: 27.6
Std nTPM: 20.9
Median nTPM: 59.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 180.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 146.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 141.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 137.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 130.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 116.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 116.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 115.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 112.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 111.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 109.0
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 72.6
Samples: 246

Max nTPM: 155.4
Min nTPM: 33.0
Std nTPM: 22.2
Median nTPM: 67.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 155.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 152.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 141.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 140.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 132.5
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 128.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 123.2
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 122.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 120.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 120.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 118.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 66.5
Samples: 205

Max nTPM: 191.3
Min nTPM: 28.5
Std nTPM: 22.6
Median nTPM: 64.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 191.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 134.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 133.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 130.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 125.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 123.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 120.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 118.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 108.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 107.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 104.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.8
FF:10164-103B2 76 years, female 30.8
Globus pallidus
Scaled Tags Per Million: 27.6
FF:10175-103C4 60 years, female 33.1
FF:10161-103A8 76 years, female 22.2
Nucleus accumbens
Scaled Tags Per Million: 35.9
FF:10037-101F1 23-56 years, mixed 35.9
Putamen
Scaled Tags Per Million: 31.6
FF:10176-103C5 60 years, female 31.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.